Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272211g00001 ATGGACATTGATCTGAACCATGCAGTAGTGAGTGAGGATGATGATGAAAACAAGGAAAATAATAACAATGCTGAATCTGACAAAGGTGCTTCTTCACCTTCTTCTTCTTCAGCTTCAGATTCTTCTTCTGTTGTGTCTTCTTACCTTGAACTTTGGCATGCTTGTGCTGGAACTCTCACATCACTCCCAAAGAAAGGGAATGTGGTTGTTTACTTCCCACAAGGACACTTAGAACAAGCCTCTTCTTCTTTCTCTCCTTTCACACCAACAATGGATGTGCCTAGCTATGATCTCAAGCCTCAAATCTTCTGCAGGGTTGTCAATGTTCAGTTACTTGCCAATAAGGAGAATGATGAGGTTTATACTCAGGTTACTTTGCTTCCACAAGATGATGATCATCAGTTGGAAGATAAGAATTTGGAGGTTGATGATGAAATTGGAGGAGATGAAGAGGGAAATAATGGAGTTCTTCCTATGAAACCAACACCTCACATGTTCTGCAAGACACTAACTGCTTCAGATACCAGCACCCATGGAGGCTTCTCTGTTCCTAGAAGAGCTGCTGAAGACTGTTTCCCTCCTTTGGTCTCACATCTGAACTCTCTTCTTGTTCTAATCTGTTTGCCACTTTGGAAATTCGGTACATTAAATCGTCGATTTAATGATTATAAGCAGCAAAGACCCTCTCAAGAGCTTGTGGCAAAAGACCTGCATGGTGTGGAGTGGAAATTTCGCCATATTTATAGAGGGCAGCCAAGGAGGCATTTACTCACAACTGGTTGGAGTATGTTTGTTGGCCAAAAGAATCTTGTTTCTGGTGATGCAGTCCTCTTTATAAGGGGTGAAAATGGAGAACTGAGATTGGGAATCAGAAGAGCTGTTAGACCAAGAAATGGTCTTCCTGGAACAGTCATTGGAAACCAAAACTGTTATCCCAATTTCCTTTCTTCTGTTTCTGATGCCATATCCACCAAAACCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCACCCTTTGTTGTTCCATATAAAAGATATGTTAAAAGCATCAACAATCCTGTGACCATTGGGACAAGATTCAAAATGATGTTTGAAATGGATGAATCTCCAGAAAGAAGGTGTGGTAGTGGTACTGTGATCGGAATGAGTGAAGTTGATCCATATAGATGGCCTAAATCAAAGTGGAGATGCTTGATGGTTAGATGGGATGAGGATATTGATACTAATCATCAAGACCGAGTATCTCCTTGGGAGATTGATCCTTTCGCTTTGCTCCCTCCTTTGAGTCTTCAGTCTTCCCCGAGACTGAAGAAATTAAGGGCAGATGGGAAAGTTTCCTCTCACAGTCACCTCATCACTGGAAGCAGTGGATTGGTGGACTTTGAGGAATCTGTAAGATCACCAAAGGTCTTGCAAGGTCAAGAAAATGCTGGTTTTCTGTCACTCTATTATGGATGTGACACGTTAACTAACCGGCAGCGATTCGAGATGAACCCTCATCCATCAGCAACTGCAGTGAGAAGGGCTAACACTGCTGAGCTTATGAGTGTTCATCCATTCAGCTATGCAAGCTTCACAGAAACTACTAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATAGGTCCATTGAAATCCCTAAGGGGAAAAGTTGATTTGAGCCTTTGTTCTTGGGGCAACACTTTCAACTTGCATCAAGCAACCAAACCACAAGTTCTTGAATCTTCTTATTCTCCCTATGAGGGTGTTCACAAGAAAACTGGTCTAACCAACATGTTTTACTCCAAACCGAGCAATTTCCATAGAGAGAATGTCTCCTTCAAGAGAATTGAAAATGGAAGAACAGATGTTCCGAATGAGCATAAGAAGACAATGCTGGGCGAAACCTGTGCAGCGGATATGAAGATTCCAAATGACAGCAAAAATGTTAAGGCAAAGGTTCACAAGCAAGGAAGCTTAGTAGGGAGAGCCATTGATCTATCAAGATTGAGCAGCTACGCAGACCTGCTGAGTGAACTAGAGAGACTTTTCGGCATGGAAGGCCTTCTTAGAGATCCTGATAAGGGATGGAGGATCCTCTACACTGATACTGATAATGATATAATGATTGTTGGAGATGATCCATGGCATGAGTTCTGCAATGTGGTGTGCAAAATCCATATATATTCCCAAGAAGAAGTGGAAAAGATGACAATTGGGATAATCAGTGATGAAACCAATAGCAGTTTGGAAGAGGCACCAATGATTATGGAGCATTCAAAGTCCTCCTCAGTGGGTCAACCAGATTATTATTCTCCAACAGTCCTTAAAGTCTAA 2319 0.4187 MDIDLNHAVVSEDDDENKENNNNAESDKGASSPSSSSASDSSSVVSSYLELWHACAGTLTSLPKKGNVVVYFPQGHLEQASSSFSPFTPTMDVPSYDLKPQIFCRVVNVQLLANKENDEVYTQVTLLPQDDDHQLEDKNLEVDDEIGGDEEGNNGVLPMKPTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLVSHLNSLLVLICLPLWKFGTLNRRFNDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSMFVGQKNLVSGDAVLFIRGENGELRLGIRRAVRPRNGLPGTVIGNQNCYPNFLSSVSDAISTKTMFHVFYSPRASHAPFVVPYKRYVKSINNPVTIGTRFKMMFEMDESPERRCGSGTVIGMSEVDPYRWPKSKWRCLMVRWDEDIDTNHQDRVSPWEIDPFALLPPLSLQSSPRLKKLRADGKVSSHSHLITGSSGLVDFEESVRSPKVLQGQENAGFLSLYYGCDTLTNRQRFEMNPHPSATAVRRANTAELMSVHPFSYASFTETTRFPRVLQGQEIGPLKSLRGKVDLSLCSWGNTFNLHQATKPQVLESSYSPYEGVHKKTGLTNMFYSKPSNFHRENVSFKRIENGRTDVPNEHKKTMLGETCAADMKIPNDSKNVKAKVHKQGSLVGRAIDLSRLSSYADLLSELERLFGMEGLLRDPDKGWRILYTDTDNDIMIVGDDPWHEFCNVVCKIHIYSQEEVEKMTIGIISDETNSSLEEAPMIMEHSKSSSVGQPDYYSPTVLKV 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272211g00001 772 ProSiteProfiles B3 DNA-binding domain profile. 216 294 IPR003340 GO:0003677
Stsc272211g00001 772 SUPERFAMILY DNA-binding pseudobarrel domain 157 304 IPR015300 -
Stsc272211g00001 772 ProSiteProfiles PB1 domain profile. 643 725 IPR000270 GO:0005515
Stsc272211g00001 772 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 48 732 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc272211g00001 772 MobiDBLite consensus disorder prediction 24 39 - -
Stsc272211g00001 772 MobiDBLite consensus disorder prediction 1 39 - -
Stsc272211g00001 772 Gene3D - 356 426 - -
Stsc272211g00001 772 CDD B3_DNA 164 292 IPR003340 GO:0003677
Stsc272211g00001 772 Pfam Auxin response factor 319 400 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc272211g00001 772 Gene3D - 164 294 IPR015300 -
Stsc272211g00001 772 FunFam Auxin response factor 639 732 - -
Stsc272211g00001 772 FunFam Auxin response factor 355 428 - -
Stsc272211g00001 772 SMART B3_2 166 294 IPR003340 GO:0003677
Stsc272211g00001 772 Gene3D - 640 732 - -
Stsc272211g00001 772 SUPERFAMILY CAD & PB1 domains 640 722 - -
Stsc272211g00001 772 MobiDBLite consensus disorder prediction 1 23 - -
Stsc272211g00001 772 Pfam AUX/IAA family 640 727 IPR033389 -
Stsc272211g00001 772 Pfam B3 DNA binding domain 166 293 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272211g00001 Stsc-Chr272211 2820 7184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272211g00001 40 755 B3 DNA Binding Superfamily AT5G60450 53.897 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc272211g00001 AUX_IAA 1.7e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272211g00001 - - gmx:100783513 994.186