Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272210g00008 ATGTCTTCCTTGGACCTCTCATCAAATAAATTGAGTGGCTCACTTCCATCAAGTATTGCCAAAGCCATTAGCCTCTCATACATAGACCTCTCTCACAACCACTTGAAAGGTCCTATCCCAACTCTTTTCCCTTATTGTGCTTTCAATGCAACAATAGATTTGAACCATAACATGTTAAATGGTAGCATTACTTTCAAAATTGGTTGTGCTACCAATGTTGACCTTAGCCATAATTTTTTCAGTGGTGAGGTTCCTTCTGTTCATGGATTAGCTTCACAGTTACAGAGTTTGGATCTTAGTTACAATAATTTCACAGGCAAATTAAACAAGGAACTTGCTGCTATAAGGTTTGTTAACCTTTCATATAATCCCTTTCACTTTTCATCACAAGATCATCATGACAAGCTCCTAGATTATTGTTCTTTTCCGAAAGACTCATTGATCGGTTGCGGCTCTCTAGATTTCGCATCCTGCCACTGTGTCCAACAAAGAAATGCACCATCAGCATCAAACAAAGCAAAGCACACAATTGTAATTGCACTTTCCATCATTGGATTCATTCTCTTAGTGTTTATTGCCACCTTGTGTGTTACTAAACATGTGGCTAAGAGAAAAGTTGAAAGAGTTTCTACCAAGAATGGAGACTTGTTCTCTATATGGAACTATGATGGAAAAATTGCATTTGAGGACATAATTGAAGCAACACAGGACTTTGATATCAGGTACTGCATTGGAACAGGTGCATATGGCAGTGTCTACCAAGCAAAATTGCCAAGTGGTAGAACTGTTGCATTGAAGAAACTTCATCAGAAGGAATCTCAGAACCCTTCATTTGACAAGAGTTTCCGGAATGAGTTTATGGTGTTATCAAGAATCCGGCATAGAAACATTGTCAAGCTTTATGGCTATTGCCTCCACAACAGGTACATGTTTCTGATCTATGAATACATGGAAAGAGGAAGCTTATTTTGTGTGTTGCACAATGATATGGAAGCTAAGGAGTTGAATTGGAGGAAGAGAATGAATATCATTAAAGGAATAGCAAATGCTTTGTCTTACATGCACCATGATTGTAAGCCACCAATTGTTCATAGAGATGTAACATGTAACAATGTTTTGCTGAACTCACACTTGGAGGCTTTCGTTTCGGACTTTGGCACTGCTAGACTTCTTGATCCGGATTCTTCAAATCAAACGCTACTAGTTGGTACTCGCGGCTATATTGCCCCAGAGCTTGCATACACTTTGAGTGTAACCGAAAAATGCGATGTTTATAGTTTTGGAGTGGTGGCATTGGAGACATTGATGGGAAGGCACCCTGAAGAGATACTATCATCTTTCTCAAGCTCTTGTGTTCAAAACTTGTTGTTGAAGGATCTCTTGGATTCTCGCCTTAGACTTCCTATGCTTCAAAGAGATGCAAAAGAGATAGTCCTAGTGGCAAAAGTAGCATTGGCATGCTTGAATTCCAATCCAAAGTTCAGACCATCAATGCAAGAAGTGGCTCAAGAGCTCTCTGGTTCCAAATTACCATTACCTGTATCATTCTTTCAAGTTTCTATTCACCAACTGATGACTCAACAAGAGATGTATCCTCCTTCATCTTGTGATTTGTAA 1617 0.3915 MSSLDLSSNKLSGSLPSSIAKAISLSYIDLSHNHLKGPIPTLFPYCAFNATIDLNHNMLNGSITFKIGCATNVDLSHNFFSGEVPSVHGLASQLQSLDLSYNNFTGKLNKELAAIRFVNLSYNPFHFSSQDHHDKLLDYCSFPKDSLIGCGSLDFASCHCVQQRNAPSASNKAKHTIVIALSIIGFILLVFIATLCVTKHVAKRKVERVSTKNGDLFSIWNYDGKIAFEDIIEATQDFDIRYCIGTGAYGSVYQAKLPSGRTVALKKLHQKESQNPSFDKSFRNEFMVLSRIRHRNIVKLYGYCLHNRYMFLIYEYMERGSLFCVLHNDMEAKELNWRKRMNIIKGIANALSYMHHDCKPPIVHRDVTCNNVLLNSHLEAFVSDFGTARLLDPDSSNQTLLVGTRGYIAPELAYTLSVTEKCDVYSFGVVALETLMGRHPEEILSSFSSSCVQNLLLKDLLDSRLRLPMLQRDAKEIVLVAKVALACLNSNPKFRPSMQEVAQELSGSKLPLPVSFFQVSIHQLMTQQEMYPPSSCDL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272210g00008 538 Gene3D Transferase(Phosphotransferase) domain 1 317 511 - -
Stsc272210g00008 538 FunFam Leucine-rich repeat receptor protein kinase MSP1 201 316 - -
Stsc272210g00008 538 ProSitePatterns Protein kinases ATP-binding region signature. 244 266 IPR017441 GO:0005524
Stsc272210g00008 538 Gene3D Ribonuclease Inhibitor 1 155 IPR032675 -
Stsc272210g00008 538 Pfam Protein kinase domain 243 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272210g00008 538 SUPERFAMILY L domain-like 3 128 - -
Stsc272210g00008 538 Gene3D Phosphorylase Kinase; domain 1 196 316 - -
Stsc272210g00008 538 ProSiteProfiles Protein kinase domain profile. 238 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272210g00008 538 CDD STKc_IRAK 244 505 - -
Stsc272210g00008 538 PANTHER LEUCINE RICH REPEAT KINASE 2 3 513 - -
Stsc272210g00008 538 FunFam MDIS1-interacting receptor like kinase 2 317 511 - -
Stsc272210g00008 538 SUPERFAMILY Protein kinase-like (PK-like) 223 505 IPR011009 -
Stsc272210g00008 538 ProSitePatterns Tyrosine protein kinases specific active-site signature. 362 374 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272210g00008 Stsc-Chr272210 22928 24689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272210g00008 1 410 Receptor kinase-like Gene Family AT4G08850 40.281 1.10e-91 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc272210g00008 Pkinase 7.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272210g00008 - - aprc:113851126 661.373