Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272209g00005 ATGTCCTCAAAATTTGGCATGGTTTTAAGGTTTCTGGAATTGAGTTCCATCTTGCAGCCTGGTAGCAGGCAGCCCAAAACCTACAAGGTTGCCATATTACGTGATGTTGTCCGAGTGATAAACCAATTAAGAGATGAAGCAGAGAAACTAAAGGAAATGAACGATGAAATGCTTCAAAAAAAATTAAATAGCTCACAGGGTGCTTAA 207 0.3913 MSSKFGMVLRFLELSSILQPGSRQPKTYKVAILRDVVRVINQLRDEAEKLKEMNDEMLQKKLNSSQGA 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272209g00005 68 Coils Coil 33 63 - -
Stsc272209g00005 68 PANTHER BHLH TRANSCRIPTION FACTOR 10 60 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Stsc272209g00005 68 Gene3D - 5 67 IPR036638 GO:0046983
Stsc272209g00005 68 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 60 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272209g00005 Stsc-Chr272209 43294 43978 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272209g00005 10 60 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 58.824 2.26e-14 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272209g00005 - - aip:107613798 87.8113