Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272208g00001 ATGGCAGCAGAGTCTCAGAGATCCACTGGCACAGTGAAATGGTTCAACGCACAGAAAGGTTTCGGATTCATAGCTCCCGACGATGGAGGCGAGGATCTCTTCGTCCACCACTCCGCCATTCGATCCGATGGTTACCGGACACTCTCCGAGGGCCAGCCGGTTGAGTTTGTCGTCGATTACGGCGACGCCGGCAGAACCAAGGCTGTCGACGTCTCTTCCATGGCTAGATCTCGCCCGTTTGGCGGTGGTTTTCGAGGTGGAGGGGGAAGAGGAGGAAGAGGAAGAGGCGGTGGAAGGTTCGGCGGTCGCTACGGCGGCGGTGAAGGCCGCGTCGATGGTGACGGTTACGGCTACGGCAGAGGTGGAGGCGGTGGTCGTAGAGGAGGAGGTTATGGTGGTGGAGGAGGCCCTGAGTGTTACAATTGTGGTCGAACAGGTCACTTGGCGAGAGATTGTTACCAGGGACAGGGCGGTGGAAACCGGAGACGAGGCGGCGGCGCTGGTGGCGGCGGCGGCGGAGGTGGAGGTTGTTTTAACTGCGGGGAGGAAGGGCATTTTGCGAGAGAATGTCCGAACACTGAAAAATGA 588 0.5952 MAAESQRSTGTVKWFNAQKGFGFIAPDDGGEDLFVHHSAIRSDGYRTLSEGQPVEFVVDYGDAGRTKAVDVSSMARSRPFGGGFRGGGGRGGRGRGGGRFGGRYGGGEGRVDGDGYGYGRGGGGGRRGGGYGGGGGPECYNCGRTGHLARDCYQGQGGGNRRRGGGAGGGGGGGGGCFNCGEEGHFARECPNTEK 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272208g00001 195 ProSitePatterns Cold-shock (CSD) domain signature. 21 40 IPR019844 -
Stsc272208g00001 195 SUPERFAMILY Nucleic acid-binding proteins 6 72 IPR012340 -
Stsc272208g00001 195 FunFam Cold shock protein CspC 7 74 - -
Stsc272208g00001 195 Pfam 'Cold-shock' DNA-binding domain 9 72 IPR002059 GO:0003676
Stsc272208g00001 195 ProSiteProfiles Cold-shock (CSD) domain profile. 7 73 IPR002059 GO:0003676
Stsc272208g00001 195 ProSiteProfiles Zinc finger CCHC-type profile. 139 152 IPR001878 GO:0003676|GO:0008270
Stsc272208g00001 195 Pfam Zinc knuckle 176 192 IPR001878 GO:0003676|GO:0008270
Stsc272208g00001 195 Pfam Zinc knuckle 138 152 IPR001878 GO:0003676|GO:0008270
Stsc272208g00001 195 Gene3D - 1 72 IPR012340 -
Stsc272208g00001 195 PRINTS Cold shock protein signature 31 40 IPR002059 GO:0003676
Stsc272208g00001 195 PRINTS Cold shock protein signature 10 25 IPR002059 GO:0003676
Stsc272208g00001 195 PRINTS Cold shock protein signature 46 64 IPR002059 GO:0003676
Stsc272208g00001 195 SMART c2hcfinal6 176 192 IPR001878 GO:0003676|GO:0008270
Stsc272208g00001 195 SMART c2hcfinal6 138 154 IPR001878 GO:0003676|GO:0008270
Stsc272208g00001 195 Gene3D - 173 195 - -
Stsc272208g00001 195 Gene3D - 134 164 - -
Stsc272208g00001 195 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 193 - -
Stsc272208g00001 195 SUPERFAMILY Retrovirus zinc finger-like domains 128 193 IPR036875 GO:0003676|GO:0008270
Stsc272208g00001 195 CDD CSP_CDS 9 71 IPR002059 GO:0003676
Stsc272208g00001 195 MobiDBLite consensus disorder prediction 80 106 - -
Stsc272208g00001 195 SMART csp_8 9 74 IPR011129 GO:0003676
Stsc272208g00001 195 ProSiteProfiles Zinc finger CCHC-type profile. 177 192 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272208g00001 Stsc-Chr272208 2794 3642 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Stsc272208g00001 CSD 5.1e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272208g00001 - - qsa:O6P43_015217 182.185