Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272207g00007 ATGTCTAAGTTAAAACAAGCCTTCACCCAACTCACTCATTCTTCCAATAACAACAACAACAAGAACAAGAAGAAGCTCTTCTTGTCTCTCTTCGCCACCCTCCTCCTCGTCGCCTCCATCGTCGCCGGCGTAAACTCCCACAAAAACAAGTCCTCCTCCACCTCTTCTTCTCTCGCACTCTCCCACCACTCCCACACCATCATCAAGAGCGCTTGCAGCTCCACATTCTACCAAGACCTCTGTTTCTCCGCCGTGGCCTCCGAGCCCGGCGTCACGAAGAAGGTCACTTCTCACAAAGATGTCATTGAATTGTCCCTCAATGTTACTTGTAGGACAGTGGAGCACAATTTCTTCGTGATCAAGAAGCTTCTTGAGGAGCGGGAGAAGATCCTCACCCACAGGGAGAGGATCGCCCTCCACGACTGCCTCGTCACCATTGATGAGTCCCTAGACGAGCTCCATCAGGCCTACGCTGACATCAAGCTCTATCCAAACTCTAACAAGAAGACTCTCTACCAGCACGCCGATGATCTCAACACCCTCATTAGTGCCGCCATAACCAACCAGGTGACTTGCTTGGACGGTTTCTCGCACGACGCTGCGGACAAGAAAGTGAGGAAGGCTCTAGAACAAGGTCAGGTACACGTGGAGCACATGTGCAGCAACGCATTGGCCATGACCAAGAACCTCACCGACACCGACATCGCAAACTACGAGCAGAAAATGATGACGACGGCGAAAGGAGGATCGAGGAAGCTGATGACGACGATGGAGGAAGAAGAAGACGAGAATGGAATCAAGTGGCCGCAGTGGATGTCGGTTGGGGACAGGAGGCTGTTGCAGGCTGCGACGGTGAAACCGGACGTGGTGGTGGCGGCGGACGGGAGCGGGAACTTCAAGACGGTTTCGGAGGCGGTGAAGGCGGCGCCGGAGAAGAGTAGCAAGAGGTATGTGATTAAGATAAAAGCTGGTGTGTACAGAGAGAATGTTGAAGTTCCGAAGAAGAAGATGAACATAATGTTCTTGGGAGATGGAAGAACAAACACCATTATCACTGGTAGTAGGAACGTTAAAGATGGCGACACTACCTTCAACTCCGCCACCGTCGCCGTAGTGGGACCAAACTTTCTTGCAAGAGACATAACCTTCCAAAACACAGCCGGAGCAGCAAAGCACCAAGCCGTGGCACTCCGTGTCGGCGGCGACCTCTCAGCCTTCTACAACTGCGATATCCTCGCTTACCAAGACACGCTCTATGTCCACAACAACCGTCAATTCTTTGTCAATTGCCTCATCGCGGGCACAGTTGACTTTATCTTTGGCAACTCGGCCGCAGTTTTTCAAAACTGCGACATCCATGCCCGGCGCCCTGACCCTGGTCAAAAGAACATGGTCACGGCGCAGGGCAGGGTTGACCCTAACCAGAACACTGGAATCGTGATCCAAAAATGTAGGATTGGTGCAACTAAGGATTTGGAGCCTGTGAAGAATAATTTCCCTACCTACCTTGGTAGGCCATGGAAGGAGTACTCTAGGACCGTGATCATGCAGAGCACCATAAGCGATGTGATTCAACCTGTTGGATGGCATGAGTGGAATGGAGACTTTGCATTGAACACTTTGATTTATAGAGAATACCAAAACACTGGGCCTGGAGCTGGTACTTCTGCTAGGGTTAACTGGAAGGGCTATAAGGTAATTACAAATGCTGCTGAGGCCCAGGCTTTTACACCTGGGACCTTCATTGGAGGATCTAATTGGTTGGGCTCAACTGGCTTCCCTTTCTCTCTTGGATTATAA 1800 0.5106 MSKLKQAFTQLTHSSNNNNNKNKKKLFLSLFATLLLVASIVAGVNSHKNKSSSTSSSLALSHHSHTIIKSACSSTFYQDLCFSAVASEPGVTKKVTSHKDVIELSLNVTCRTVEHNFFVIKKLLEEREKILTHRERIALHDCLVTIDESLDELHQAYADIKLYPNSNKKTLYQHADDLNTLISAAITNQVTCLDGFSHDAADKKVRKALEQGQVHVEHMCSNALAMTKNLTDTDIANYEQKMMTTAKGGSRKLMTTMEEEEDENGIKWPQWMSVGDRRLLQAATVKPDVVVAADGSGNFKTVSEAVKAAPEKSSKRYVIKIKAGVYRENVEVPKKKMNIMFLGDGRTNTIITGSRNVKDGDTTFNSATVAVVGPNFLARDITFQNTAGAAKHQAVALRVGGDLSAFYNCDILAYQDTLYVHNNRQFFVNCLIAGTVDFIFGNSAAVFQNCDIHARRPDPGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEPVKNNFPTYLGRPWKEYSRTVIMQSTISDVIQPVGWHEWNGDFALNTLIYREYQNTGPGAGTSARVNWKGYKVITNAAEAQAFTPGTFIGGSNWLGSTGFPFSLGL 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272207g00007 599 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 66 231 IPR035513 -
Stsc272207g00007 599 Pfam Plant invertase/pectin methylesterase inhibitor 67 226 IPR006501 GO:0004857
Stsc272207g00007 599 FunFam Pectinesterase 282 599 - -
Stsc272207g00007 599 NCBIfam pectinesterase inhibitor domain 54 231 IPR006501 GO:0004857
Stsc272207g00007 599 Gene3D - 282 599 IPR012334 -
Stsc272207g00007 599 Pfam Pectinesterase 288 584 IPR000070 GO:0030599|GO:0042545
Stsc272207g00007 599 Gene3D Invertase/pectin methylesterase inhibitor family protein 63 232 IPR035513 -
Stsc272207g00007 599 ProSitePatterns Pectinesterase signature 2. 432 441 IPR033131 -
Stsc272207g00007 599 SUPERFAMILY Pectin lyase-like 283 598 IPR011050 -
Stsc272207g00007 599 SMART PMEI_2 63 226 IPR006501 GO:0004857
Stsc272207g00007 599 PANTHER PECTINESTERASE 37 589 - -
Stsc272207g00007 599 CDD PMEI-like_3 70 231 - -
Stsc272207g00007 599 FunFam Pectinesterase 64 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272207g00007 Stsc-Chr272207 28287 37705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272207g00007 15 599 Carbohydrate Esterase AT3G14310 68.289 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272207g00007 K01051 - gmx:100776623 880.552