Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272203g00006 ATGTGTGGAATCCTTGCAGTGCTGGGTTGTGTTGACAACTCTCAGGCCAAGCGCTCTCGCATCATCGAGTTATCACGAAGATTGAAGCATAGAGGACCTGATTGGAGTGGGTTGCATTGCCATGGAGATTGTTATCTTGCTCATCAAAGGCTTGCCATTGTTGACCCTACTTCAGGGGATCAACCTCTTTATAACGAAGACAAGACTGTTATTGTCACAGTAAATGGAGAGATATATAACCATAAGGAACTGAGACAGAAACTGAGTTCCCACCAGTTCCGAACTGGAAGCGACTGTGAAGTCATTGCTCATCTTTATGAAGAGTATGGAGAAGAATTTGTTGATATGCTAGATGGCATGTTCTCCTTTGTCCTTCTTGACACAAGAGATAAAAGCTTCATTGCTGCTCGTGACGCTATTGGGATTACCCCTCTTTACTTGGGATGGGGCCTTGACGGATCGACATGGTTTGCATCTGAAATGAAAGCTTTGAGTGATGATTGTGAGAGATTCATATCTTTTCCTCCAGGGCATATATATTCCAGCAAACAGGGAGGATTAAGAAGATGGTACAATCCACCATGGTTCTCAGAGCAAATTCCATCAACACCCTATGATCCTCAGGTCTTACGTCAGGCCTTTGAGAAGGCTGTGCTTAAGAGGCTGATGACTGATGTACCTTTTGGAGTTCTTTTGTCGGGAGGACTTGACTCATCACTTGTTGCTGCCGTGACCAATCGTTATGTGTCTCAATCGGCAGCTGCACAACAGTGGGGATCACAGTTGCATAGTTTCTGTATTGGTTTAAAGGGCTCCCCAGATTTGAAAGCTGCAAAAGAGGTAGCAGATTATCTTGGTACTCGACATCATGAACTTCATTTCACAGTTCAGGAAGGTATAGATGCACTTGAAGAAGTCATTTACCACATCGAAACATATGATGTAACGACTATCAGAGCAACACCTAATAAGGAAGAGTTTCATGAAGAAACATGTCGAAAAATAAAAGCTCTTCATCTTTATGACTGCCTGAGAGCCAACAAATCAACTTCAGCATGGGGTATAGAGGCACGTGTACCGTTCTTGGATAAAGAATTTATCAACACAGCCATGAGTATGGATCCAGAGTGGAAAATGATACGACCTGATCTCGGAAGGATAGAGAAGTGGGTATTGCGCAATGCATTTGATGACGAAACAAATCCATATTTACCAAAGCACATTTTGTACAGGCAGAAGGAACAGTTCAGTGATGGTGTAGGGTACAGCTGGATTGATGGCTTGAAGGAGCATGCTAACCAACAAGTCACAGATGGAATGCTATCGCAAGCTAGCTTTGTTTACCCTGAAAACACTCCCACAACAAAAGAAGCATACCTCTACAGGACAATTTTTGAGAAGCATTTTCCAAAGAATGCTGCAAGGTCAACAGTTCCAGGAGGTCCTAGTGTTGCATGCAGCACCGCAAAAGCAGTCGAATGGGATGCTGCATGGTCAAAGAATCCTGATCCTTCTGGTCGTGCTGCGCTTGGGGTTCATGCGGCAGCATACGATGGTGCTGCGGATACCTAA 1572 0.4408 MCGILAVLGCVDNSQAKRSRIIELSRRLKHRGPDWSGLHCHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVIVTVNGEIYNHKELRQKLSSHQFRTGSDCEVIAHLYEEYGEEFVDMLDGMFSFVLLDTRDKSFIAARDAIGITPLYLGWGLDGSTWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPWFSEQIPSTPYDPQVLRQAFEKAVLKRLMTDVPFGVLLSGGLDSSLVAAVTNRYVSQSAAAQQWGSQLHSFCIGLKGSPDLKAAKEVADYLGTRHHELHFTVQEGIDALEEVIYHIETYDVTTIRATPNKEEFHEETCRKIKALHLYDCLRANKSTSAWGIEARVPFLDKEFINTAMSMDPEWKMIRPDLGRIEKWVLRNAFDDETNPYLPKHILYRQKEQFSDGVGYSWIDGLKEHANQQVTDGMLSQASFVYPENTPTTKEAYLYRTIFEKHFPKNAARSTVPGGPSVACSTAKAVEWDAAWSKNPDPSGRAALGVHAAAYDGAADT 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272203g00006 523 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 192 IPR029055 -
Stsc272203g00006 523 PIRSF Asn_synthetase_glu-h 316 479 IPR006426 GO:0004066|GO:0006529
Stsc272203g00006 523 PIRSF Asn_synthetase_glu-h 1 322 IPR006426 GO:0004066|GO:0006529
Stsc272203g00006 523 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 185 IPR017932 -
Stsc272203g00006 523 FunFam Asparagine synthetase [glutamine-hydrolyzing] 2 192 - -
Stsc272203g00006 523 Pfam Glutamine amidotransferase domain 48 165 IPR017932 -
Stsc272203g00006 523 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 195 IPR029055 -
Stsc272203g00006 523 CDD Asn_Synthase_B_C 211 419 IPR001962 GO:0004066|GO:0006529
Stsc272203g00006 523 Gene3D HUPs 195 320 IPR014729 -
Stsc272203g00006 523 Gene3D HUPs 321 477 IPR014729 -
Stsc272203g00006 523 PANTHER ASPARAGINE SYNTHETASE 1 320 - -
Stsc272203g00006 523 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 199 447 - -
Stsc272203g00006 523 CDD AsnB 2 192 IPR033738 -
Stsc272203g00006 523 Pfam Asparagine synthase 320 474 IPR001962 GO:0004066|GO:0006529
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272203g00006 Stsc-Chr272203 40264 45628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272203g00006 2 164 PRT Gene Family AT4G34740 28.230 1.97e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272203g00006 K01953 - cit:102618937 979.163