Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272202g00001 ATGGATCTTGTTCCACCCTCTGAGCACCTCTGCTATGTTCGTTGCAACTTCTGCAACACTGTGCTTGCGGTTGGGATACCATGCAAGAGGCTGCTAGACACAGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCCTTTCTGAGCACCAGGCCACCTCCTCCGTCTCCTTTCTCTCACAACCATCAATCCACCGCCATTGATCACACCCTCACTCTCCAGGCATCTCGTTTTTTCCTTTCACTGGTTTTTGTTTCTAATAGAAACTTTTAG 273 0.4908 MDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPPPSPFSHNHQSTAIDHTLTLQASRFFLSLVFVSNRNF 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272202g00001 90 Pfam YABBY protein 6 69 IPR006780 GO:0007275
Stsc272202g00001 90 PANTHER PROTEIN YABBY 6-RELATED 6 64 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272202g00001 Stsc-Chr272202 5682 6104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272202g00001 5 53 C2C2-YABBY Transcription Factor Family AT1G69180 77.551 5.48e-24 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Stsc272202g00001 YABBY 1.4e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272202g00001 K25796 - gmx:100819079 129.413