Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272200g00005 ATGTCAGGTGACGAAGCCCCCGCTGTGGTACCCGAGGTAGCAGCAGCCCCAGCCATTGGTGAGCCAATGGATATCATGACTGCCTTGCAGCTTGTGCTCAGGAAGTCACTTGCTTATGGTGGTCTTGCACGTGGCCTTCATGAGGGTGCTAAGGTTATTGAGAAGCGCACTGCGCAGCTTGTTGTTCTTGCAGAGGACTGCGACCAACCCGACTATGTTAAACTTGTCAAGGCCCTTTGTGCTGAGCACAATGTTAGCCTTCTCACAGTTCCAAGTGCAAAGACCCTTGGAGAGTGGGCTGGCTTATGCAAGATCGACTCAGAAGGAAAAGCTAGGAAGGTGACTGGCTGCTCCTGCGTCGTTGTGAAGGACTTTGGTGAGGAACATGAAGCCTATAATGTTGTCCTTCAGCATGTGAAGGCTCAATGA 429 0.5175 MSGDEAPAVVPEVAAAPAIGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKRTAQLVVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272200g00005 142 SUPERFAMILY L30e-like 22 140 IPR029064 -
Stsc272200g00005 142 PRINTS Ribosomal protein S12E family signature 32 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Stsc272200g00005 142 PRINTS Ribosomal protein S12E family signature 87 108 IPR000530 GO:0003735|GO:0005840|GO:0006412
Stsc272200g00005 142 PRINTS Ribosomal protein S12E family signature 46 62 IPR000530 GO:0003735|GO:0005840|GO:0006412
Stsc272200g00005 142 PRINTS Ribosomal protein S12E family signature 112 125 IPR000530 GO:0003735|GO:0005840|GO:0006412
Stsc272200g00005 142 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 28 121 IPR004038 -
Stsc272200g00005 142 PANTHER 40S RIBOSOMAL PROTEIN S12 16 141 - -
Stsc272200g00005 142 FunFam 40S ribosomal protein S12 9 142 - -
Stsc272200g00005 142 Gene3D - 10 142 IPR029064 -
Stsc272200g00005 142 ProSitePatterns Ribosomal protein S12e signature. 28 46 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272200g00005 Stsc-Chr272200 33504 35190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272200g00005 19 142 Cytoplasmic Ribosomal Protein Gene Family AT1G15930 76.613 6.59e-67 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272200g00005 K02951 - gmx:100786733 249.21