Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272200g00003 ATGCCTGCCATTGCCGTCGTCGACGCCTCATCGGCTTCCAGCCAAACGGTGTGTGTCACCGGCGCCGGAGGCTTCATAGCCTCTTGGCTTGTGAAGCTTCTCTTGGAGAAAGGCTACACCGTCAAAGGAACACTGAGAAACCCAGATGATCCAAAGAATCAGCACCTGAGAGAGTTGGAAGGAGCAAAGGAAAGATTAACTCTTCATAAAGTTGAACTTCTTGATTTTGAGTCCGTTAAGTCTGTTTTCAATGGCTGCCATGGAGTCTTCCACACAGCTTCTCCGGTCACTGACAACCCTGAAGAGATGGTGGAACCAGCAGTGAATGGAACAAAGACTGTGATAATGGCAGCTGCAGAAGCAAAAGTGAGGCGCGTGATTTTCACTTCCTCAATTGGAACAGTTTATATGGACCCCAAAACCAGCAGGGATCAAATTGTTGATGAATCTTCTTGGAGTGATTTAGACTATTGCAAGAACACCAAGACAGTGGCTGAACAAACAGCATGGGAAATATCAAAAGAGAAAGGTGTTGACCTAATTGTGGTGAACCCAGTTTTGGTGCTTGGACCATTGCTACAATCCACCATAAATGCAAGCACAATTCACATCCTGAAATACCTAACAGGATCAGCAAAGACATTTGTGAATGCTGCTCAGGCTTATGTCCATGTTAAGGATGTTGCATTGGCACACCTTCTTGTTTATGAGACACCTTCTGCTAATGGCAGATACATTTGTGCTGAGAGTTCATTGCACCGTGGTGAACTTGTTGCTATTTTGGCCAAGTATTTCCCTGAGTACCCTGTTCCTACCAAATGTTCAGATGAGAAGAACCCAAGAGTAAAACCCTACATATTTTCAAATCAAAGGCTCAAAGATTTGGGAATGGAATTCACTCCAGTGAATCTTTGTCTCTATGAAACAGTGAAGAATCTTCAGGACAATGGCCATCTTCCTCTTCCTCCAAAGCAAGAACACTCCTTCTAA 990 0.4434 MPAIAVVDASSASSQTVCVTGAGGFIASWLVKLLLEKGYTVKGTLRNPDDPKNQHLRELEGAKERLTLHKVELLDFESVKSVFNGCHGVFHTASPVTDNPEEMVEPAVNGTKTVIMAAAEAKVRRVIFTSSIGTVYMDPKTSRDQIVDESSWSDLDYCKNTKTVAEQTAWEISKEKGVDLIVVNPVLVLGPLLQSTINASTIHILKYLTGSAKTFVNAAQAYVHVKDVALAHLLVYETPSANGRYICAESSLHRGELVAILAKYFPEYPVPTKCSDEKNPRVKPYIFSNQRLKDLGMEFTPVNLCLYETVKNLQDNGHLPLPPKQEHSF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272200g00003 329 CDD FR_SDR_e 17 296 - -
Stsc272200g00003 329 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 15 310 - -
Stsc272200g00003 329 Gene3D - 7 329 - -
Stsc272200g00003 329 FunFam Cinnamoyl-CoA reductase 1 8 329 - -
Stsc272200g00003 329 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 312 IPR036291 -
Stsc272200g00003 329 Pfam NAD dependent epimerase/dehydratase family 17 241 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272200g00003 Stsc-Chr272200 13178 17420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272200g00003 14 273 Monolignol Biosynthesis Gene Families AT1G80820 69.663 1.13e-130 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272200g00003 K09753 - gmx:100799994 556.214