Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272200g00001 ATGCCTCCAGAGCAGCCACAGTTTATTTCAAGCACTGGTGGTAATAACCACAGCTTCACAAATGCACCCTTAATAGACTCCATAGATGTTCACCAAATTGAAGTTCCTGATAGGAGAAGCTGGAAGAATTTATTTGCATATATGGGGCCTGGATTTCTTGTTTCTATTGCATACATAGACCCAGGAAACTTTGAGACGGATCTTCAATCTGGAGCACAATATAAATATGAGTTACTTTGGATTGTATTGTTGGCATCATGTGCTGCTCTTTTAATTCAATCAATGGCTGCCAATCTTGGAGTTGTAACTGGAAAGCACTTAGCAGAGCATTGTAGAGCTGAATATCCGCGAGTACCGAACATTATCCTTTGGATCATTGCTGAAATTTCTGTTGTGGCTTGTGATATTCCAGAAGTAATTGGGACAGCATTTGCATTGAACATGCTTTTCAGCATACCTGTTTGGATTGGTGTTCTTCTTACAGGACTAAGTACATTGATCCTCTTAGCATTACAACAATATGGGATTCGGAAACTCGAATTCTTAATTGCATTTCTGGTATTTACCATTTGTGCTTGCTTTATGGTTGAGCTTGGATATGCAAAGCCTGATGCAAAAGAAGTAGTGAAGGGTCTGTTTGTTCCACAGCTTAAAGGAAATGGTGCTACTGGTCTTGCAATTTCACTCCTTGGTGCTTTGGTTATGCCGCACAATCTCTTCCTTCACTCGGCTTTGGTGCTTTCGAGGAAAATACCGCGATCCGTTCGTGGAATCAAGGAAGCTTGCAGATTTTACATGATAGAAAGTGGATTTGCTCTTATGGTGGCCTTCTTCATAAACATCTCTGTTATCTCTGTAAGTGGTGCAGTTTGCAATTCTTCAAATCTGAGTGCAGATGATCAGAAGAGCTGCGATGATTTGGATTTGAACAAAGCCTCCTTTCTACTAAGAAATGTGTTGGGGAAATGGAGTTCAAAACTGTTTGCAATTGCTTTGCTAGCATCAGGTCAAAGTTCTACCATTACAGGAACATATGCAGGGCAATATGTGATGCAGGGCTTTCTAGATTTGAGATTGAAGCCATGGATTCGGAACATGTTAACTCGTTGCTTAGCCATTACTCCTAGTTTGGTTGTAGCACTCATCGGTGGCTCCTCCGGTGCCGGAGAGCTCATAATTATTGCATCTATGATCTTATCGTTCGCGCTTCCGTTCGCTTTGACTCCACTTCTCAAGTTCACTAGCAGCAAAACCAAGATGGGAGAGCATCATGTTAACTCATTCATGATCTCGGCCGTTACTTGGATCATCGGGTCCCTGATCATGACCATGAACATATACTACTTAATATCTAGCTTCATCAAGTTGCTTCTTCATGCTAAGATGAAAATTGTTGGGAAAGTGTTTCTGGGAGTACTAGGGTTCTTCGGCGTGGCGGTGTACTTAGCCGGGATTGCATATCTGGTGTTCCGGAAGAACAGAAAGGCTACACCATTTTTGGAACTAAGATCAGCAACACAGGATGATGATCAACAAATGGGAAATGAACATTGCAATGAGTCACTTTATCATCTTCCAAGAGAAGACATAGTAAGCATGCAATTGCCTGAGAGGATTATTAGTCAAGCAGATATTTGA 1638 0.4151 MPPEQPQFISSTGGNNHSFTNAPLIDSIDVHQIEVPDRRSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIVLLASCAALLIQSMAANLGVVTGKHLAEHCRAEYPRVPNIILWIIAEISVVACDIPEVIGTAFALNMLFSIPVWIGVLLTGLSTLILLALQQYGIRKLEFLIAFLVFTICACFMVELGYAKPDAKEVVKGLFVPQLKGNGATGLAISLLGALVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESGFALMVAFFINISVISVSGAVCNSSNLSADDQKSCDDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWIRNMLTRCLAITPSLVVALIGGSSGAGELIIIASMILSFALPFALTPLLKFTSSKTKMGEHHVNSFMISAVTWIIGSLIMTMNIYYLISSFIKLLLHAKMKIVGKVFLGVLGFFGVAVYLAGIAYLVFRKNRKATPFLELRSATQDDDQQMGNEHCNESLYHLPREDIVSMQLPERIISQADI 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272200g00001 545 NCBIfam Nramp family divalent metal transporter 49 417 - -
Stsc272200g00001 545 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 36 497 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc272200g00001 545 Pfam Natural resistance-associated macrophage protein 64 425 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc272200g00001 545 PRINTS Natural resistance-associated macrophage protein signature 123 149 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc272200g00001 545 PRINTS Natural resistance-associated macrophage protein signature 176 197 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc272200g00001 545 PRINTS Natural resistance-associated macrophage protein signature 226 249 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc272200g00001 545 PRINTS Natural resistance-associated macrophage protein signature 151 170 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc272200g00001 545 PRINTS Natural resistance-associated macrophage protein signature 336 355 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc272200g00001 545 PRINTS Natural resistance-associated macrophage protein signature 364 381 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc272200g00001 545 PRINTS Natural resistance-associated macrophage protein signature 396 415 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc272200g00001 545 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 43 420 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc272200g00001 545 Hamap Divalent metal cation transporter MntH [mntH]. 36 453 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272200g00001 Stsc-Chr272200 5308 8387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272200g00001 11 545 Inorganic Solute Cotransporters AT1G15960 76.909 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272200g00001 K21398 - gmx:100797298 853.203