Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272199g00009 ATGGCGAAGAGAGAGAGAGGGGTTTCCGCGTCTGCTGGAAAAGCGGCGGAATTGAAGGAGAAGTTGAAGGAACTCGTCAAGGCCATCGTGGATGACGACGACTACAGCACGCGCGACGCCGAAGACGCCATCGCCACTCTATCGAGTCTCAGGGATTTGAAGAGAGCATCGCCTTCATCGTTCGATGACTTAAGCTTACCCGTTCCTCCCGAATTTCGATGCCCCATTTCCACCGAGTTGATGTCGGATCCTGTTATCTTGGCCACCGGACAGACTTATGATCGGGCATACATTCAGAGGTGGTTGGATGAAGGGCACAGAACATGCCCTCAAACCCAGCAAGTCCTCTCACACACTCTTCTTACTCCAAATTACTTGGTCCGAGACATGATTGCTCAGTGGTGTAAGGAGCATGCAATTGAGATCCCAAAACCAGTTCAAGACATCAACCAAGTAGTGAGTAATGCAGATAGAGACCACTTGGATTCATTACTTCATAAGCTGTCATTGTCTGTCCCTGATCAGAAAGAAGCTGCGAGAGAGCTTCGCCTCCTAACGAAGCGAATGCCTTCCTTTAGAACCCTCTTTGTCGAGTCGGCTGATGTGATTCCGCAGTTGCTCAGTCCATTATCACCTAATACTGCTCGCATTCACCCCGAACTCTATGAGGACTTGGTTACAACTATTCTAAATCTCTCAATTCAGGATGATAATAAGAAAGTGTTTGGAGAGGATCCATCTGTCATTGCTCTTCTCAATGATGCCTTAAAATCCGGAACAATTCAGACAAGGAGCAATGCTGCGGCCGCTGTTTTCACCTTGTCCGCTCTCGACTCCAACAAGCAGATCATTGGGAAGTCCGGAGCCATCAAACATTTGCTTGATCTTTTAGAGGAGGGACAGCCATTAGCCATGAAAGATGCTGCCTCAGCAATATTCAGCCTATGTCTCGTGCACGAGAATAAAGGGAGGACGGTGCGAGAAGGCGCAGTCCGGGTTATCCTATACAAGATCATGGATCAGATTCTAGTTGATGAGTTGCTAGCTATATTGGCACTCCTTTCCAGCCATCCCAAGGCCATTGAAGAAATGGGTGATCTCGGAGCTGTAGCCTTGTTGCTGGCTATCATAAGGGAGGGCACGTCAGAGCGAACCAAGGAGAATTGTGTTGCAACTTTGTATACAATCTGTTACAGTGATAGAACAAAGTTGAAGGAAGTTAGAGAAGAAGAAAAAGCCAACGGTACACTGTCTAAACTTGCGCGTTCGGGAACTTCAAGGGCGAAAAGGAAGGCTAACGGGATTCTTGAGAGGCTCAATCGGTCACCCTGCTTAACACACACTGCTTAA 1350 0.4793 MAKRERGVSASAGKAAELKEKLKELVKAIVDDDDYSTRDAEDAIATLSSLRDLKRASPSSFDDLSLPVPPEFRCPISTELMSDPVILATGQTYDRAYIQRWLDEGHRTCPQTQQVLSHTLLTPNYLVRDMIAQWCKEHAIEIPKPVQDINQVVSNADRDHLDSLLHKLSLSVPDQKEAARELRLLTKRMPSFRTLFVESADVIPQLLSPLSPNTARIHPELYEDLVTTILNLSIQDDNKKVFGEDPSVIALLNDALKSGTIQTRSNAAAAVFTLSALDSNKQIIGKSGAIKHLLDLLEEGQPLAMKDAASAIFSLCLVHENKGRTVREGAVRVILYKIMDQILVDELLAILALLSSHPKAIEEMGDLGAVALLLAIIREGTSERTKENCVATLYTICYSDRTKLKEVREEEKANGTLSKLARSGTSRAKRKANGILERLNRSPCLTHTA 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272199g00009 449 PANTHER U BOX DOMAIN-CONTAINING 18 439 - -
Stsc272199g00009 449 FunFam RING-type E3 ubiquitin transferase 67 141 - -
Stsc272199g00009 449 SUPERFAMILY ARM repeat 121 439 IPR016024 -
Stsc272199g00009 449 CDD RING-Ubox_PUB 69 121 IPR045210 -
Stsc272199g00009 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 141 IPR013083 -
Stsc272199g00009 449 Gene3D - 173 444 IPR011989 -
Stsc272199g00009 449 Pfam U-box domain 68 139 IPR003613 GO:0004842|GO:0016567
Stsc272199g00009 449 ProSiteProfiles U-box domain profile. 67 141 IPR003613 GO:0004842|GO:0016567
Stsc272199g00009 449 SUPERFAMILY RING/U-box 58 145 - -
Stsc272199g00009 449 SMART Ubox_2 71 134 IPR003613 GO:0004842|GO:0016567
Stsc272199g00009 449 SMART arm_5 277 317 IPR000225 GO:0005515
Stsc272199g00009 449 SMART arm_5 357 398 IPR000225 GO:0005515
Stsc272199g00009 449 FunFam RING-type E3 ubiquitin transferase 151 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272199g00009 Stsc-Chr272199 48788 51186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272199g00009 130 449 U-box Gene Family AT3G07360 57.143 1.41e-121 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272199g00009 - - gmx:100806619 642.884