Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272196g00008 ATGGCATCTCTCACTTCTTCCTTCACAAACTTTCGATCCGCTTCCTCATGGTTTGAGGTCTACGCCGCCTTCTCCACTCTCATGATGCTTCTCAGAACAGCTGTCAACGACATCTTGCCGGAGAAGCTCCGATCCTACATTGCCAAAAAGATCGAGTCACTCTTCTTCCCCACAGCCAACACAAACAACAACCTCGTATCCATCAGAATCAACCAAAGATGGGACAATAACGAACAAAACGAACTCTACAACGCTGCCTCCAAGTACCTCCCAACCAGAATATCCGAAACCTACAAGTCCCTCAGATTAGGCAAATTGAACTCCCGCAAGGGCCTCGTGTCCGCAGTTGCCGCAAACCAAGATGTAATAGACGAATACCAAGGGTTCAAGTACACTTGGACCCTCGATCAAAACAAAGACGATTCCTCCAACTCCAATAAGGATCCTGCGTTTGTTCTAAGCTTCAAGGAGAAGCACAGAGACTCGGTGATGAAGAGCTACATTCCGCACTTGCTTGCAACCTGCGAGGCCATGGATGCAGAGGACGTGACTGTTAAGATATTTTCAATGGCGCACATGTATTGGAACGAGAGTGAGTTGTGTCACCCTGCCACGATGGACACGCTGGCTTTGGATCCTGAATTGAAGCAAACCATCATTGATGATCTTAACCGGTTCTTGAAGAGGAAGGAGTTCTACAAGAAAGTGGGCAAGCCTTGGAAACGTGGGTACTTGTTGTATGGTCCTCCTGGAACGGGAAAATCTAGCCTCATTGCTGCCATTGCCAATTACTTGAAGTTCAATGTGTATGATTTGGAGCTGGCCTCCATTGGCTCTAACGAGAACCTGATGCAACTGATGAGGAGTACAAGCCCTCGTTCCATCATTGTCATTGAAGACATTGACTGCAACAAGGAGGTCCATGTTCGTCGCAGAGAGAGAGTAGATTACCACCAGTACACCGATTCAGAGTTAGAGTCATTACACAATGATGATGACCCTCAAACTGAAATTGTAAAGGTTGACAAGTTTACTCTCTCGGCTCTGCTCAACTACATGGATGGGTTGTGGTCAGGCTATGGAGAGGAAAGGATTATAATATTCACGACAAACCACAAAGACAAGATTGATCCAGCATTGCTCAGGCCAGGCAGGATGGACATGCACATTCATTTATCTTTCCTCAAACCCAAGGCATTCAGAATAATGGCCTCCAATTACTTGGAGGATCATCATCCTCATCCCCTCTTTCAACAAATAGAGGACTTGTTGGAGAAAATAAATGTTACTCCAGCGGTTGTTGCAGAGCAGTTGATGAGAAGTGAAGATCCTCACGTTGCTTTGGATGGACTCTGCAACTTCCTTCAAGACAAGATACACAACCAACCCAATACAGGAGACTCTGATGACAATCAAAAGCCATTGTTTTGA 1431 0.4591 MASLTSSFTNFRSASSWFEVYAAFSTLMMLLRTAVNDILPEKLRSYIAKKIESLFFPTANTNNNLVSIRINQRWDNNEQNELYNAASKYLPTRISETYKSLRLGKLNSRKGLVSAVAANQDVIDEYQGFKYTWTLDQNKDDSSNSNKDPAFVLSFKEKHRDSVMKSYIPHLLATCEAMDAEDVTVKIFSMAHMYWNESELCHPATMDTLALDPELKQTIIDDLNRFLKRKEFYKKVGKPWKRGYLLYGPPGTGKSSLIAAIANYLKFNVYDLELASIGSNENLMQLMRSTSPRSIIVIEDIDCNKEVHVRRRERVDYHQYTDSELESLHNDDDPQTEIVKVDKFTLSALLNYMDGLWSGYGEERIIIFTTNHKDKIDPALLRPGRMDMHIHLSFLKPKAFRIMASNYLEDHHPHPLFQQIEDLLEKINVTPAVVAEQLMRSEDPHVALDGLCNFLQDKIHNQPNTGDSDDNQKPLF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272196g00008 476 Gene3D - 196 390 IPR027417 -
Stsc272196g00008 476 CDD RecA-like_BCS1 219 392 - -
Stsc272196g00008 476 Gene3D - 391 462 - -
Stsc272196g00008 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 442 IPR027417 -
Stsc272196g00008 476 ProSitePatterns AAA-protein family signature. 364 382 IPR003960 GO:0005524|GO:0016887
Stsc272196g00008 476 Pfam ATPase family associated with various cellular activities (AAA) 245 392 IPR003959 GO:0005524|GO:0016887
Stsc272196g00008 476 PANTHER BCS1 AAA-TYPE ATPASE 22 459 - -
Stsc272196g00008 476 SMART AAA_5 240 396 IPR003593 GO:0016887
Stsc272196g00008 476 Pfam Domain associated at C-terminal with AAA 39 135 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272196g00008 Stsc-Chr272196 36910 38340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272196g00008 214 393 Calmodulin-binding Proteins AT3G56690 29.630 4.24e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272196g00008 - K08900 gmx:100789094 546.969