Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272193g00004 ATGTCTAGTAAGAAGGTTATGACAACAATGAAGAAGGAAGAGAATCCAGATTTGCAGAAGCAGATGGGGTGCATCCGTGGATTCTTTCACTTCTTTGATCATCGTCACTGGTTCCTTACAAACAACAACTATAATAATACTTCTCCACCCGGTGTAACCAATAATGAAGCCAAAGAGCTGAACAATAAGATGCTAAATGCAATGGCTAGCAATAATGTGAAGGTTGCAAGAGAGAATCAACAATTCTCCACAGAATCATCAGGAACTTCCAACTCATCATCTTCTTGTTCATCTAGCATGTCATCCCTAGAGTTCAACAGAACAATTCTCAGCCAAATCCGGATCCAAGAGAACTCCAATTCAGAAGCAGCAGTAAAACAACCCAACACCCCAGCTCATGAGTCCCTGGATTTCTACGATATTGTCAAAGACTCAATGCAGAGAGAACCACGAGCGTTATCAGTCAAAACTGCAGCTAAAGAGGAAACGAAGGGTCGTATCTTGAAACACATCGACTCTCCCCGGCCTTTGCAGACACCTAAATCAGCCACAATCACCAATGAACCTCTCCATATTCTTGGTAGGTCTAGGAGAAAGCCGTGGGATTCACCTCGACGCTCGTATGATGAGAGGGAGATACAACAATTATTAAAGCACAAGGAAATCCCAAGGCTTTCCTTGGACAGCAGACAAGGATCCAATAAAGGCTATAATGAAGCAACAAGATCTCAAAATCTCTTGAAAGATGCGGAGACAGGGTATGAGAGTTCGAGCACAATGCTTAGGCAGCAGCAACACGAACCGGAAACTCCTAAGAGACCGTCCAGTGTTGTTGCAAAGTTAATGGGACTGGAAGAACTCCCAGATTGCACACAAACTTGTGATACTCCTTCGCAGATGTCTAGCATAAGCGAAGGATATAATCAACACAAAAGTCCAGTTTCCCCCTTAACAAGCAAGCAAAGCTCGGTGATATCTAGAAGGGACGATGCCTTAATCAGAAAAGCAACACCGTATTCACGATTTTCACTTGAACCAATTCCATGGGAGCAACCTGATGCAAGCCAAGATTCTGATTTACAAGTTCCCAAGGGAAGTGAGACTTCAATAACAGCTTCAAACTCCTCCCACTCTGTATATGGTGAAATTGAGAAAAGGATTGCAGATCTTCAGTTTAAAAATTCAGGAAAGGATCTCAGAGCCCTTAAGCAGATTCTGGAAGCAATGCAGAGATATAAAGATTCACTAGATATTACAAGAGATAGGGAAACAAATTACCCTTCTAACAAAAGTCTCACTGAAAGCTCGAAATTACGAAGCCCAAGACAACAGAACAACACAACAGTTGTCACTGATGATACTACAAATTCACCCCGGGGTAGAAAATTTCCAATTGTCATCATGAAGCCAGCAGAAATCTCAAGGAAACCCAATGTCGCAACCAAAGACATGATTAATGGAAAATCAGGCTGCATCAAGTTTTCCACAGATGGAAGATTGCTTGACAAGCTTGAAAGTCAAACCGCAAAAGGAACCAGTCCAGCAAATCCTTTGAGTCAACGCTTCCATTCTGCAGATAAAAGTAACATGATGAAAACTTCAAAATTAATGCAGGCCTCAAAAGTCCCTCAGATCATCAATGGAGAGAAGACCAATAACTCCAGCCACACAGTAGAGACCAGAAGCCCAAGAGTACAAAATAAGTTTGGTTTTGAGAGGCATTCACCAATAAACCAATCATCAGAGTCCAGAAGTAACAGAAGACAACACAAGCAATCACCGGAATCATTGTCCCCAAGTTCAACCCCCAGGCAAAAAGCATCTACTTTGCAGCATAGGAATGAAGCCTTCAGCAAGATCCGGTGTCAAAGGAGGAACTTTAAGCATCTAGTGGATATTATTTCCTCCAATGTTGATAGCAACAGAAGCATTGATTCTCAACGTGACATAGAGTGCACCCAAGCAGGTCATTCTGGAAGCAACTATAGCATCTCATTTCAAGAGGAGACTAACATGAATCACAATACCACTGCAAAAGAGCTAAGCAAGGAAAGTGCTATGGCCACAGTAACAGTTACTTCAGAACAACAAAGTCCAGTTTCTGTTCTTGATCCACGATTCTACAATGAGGATCCACCTTCTCCAATTAAAAAGAAGATAGAATGCTCAAAAGATTTAGATGAAGCTTTAGCCACTTCTGATAACATAGGGCATGCATCGGATGTTCCTCTTTCATTCAACAATACAAAAGCCAACTTCAGAAATGGAACCAGTGATGATGACCTTCAAACTCAGAATTTGGTTCAAGGTCTTCGGCAAAATGACGATAATAATGAGAAATTCCCCAATTGCAGAGAGAGAAAAGATTCTGACCGTAAATACATTGCAGAAATATTGCTCGCATCAGGGCTGCTCAGTAGCCCCAGCTCAATCCAGGCAGTTCATTCCCCAGGTCACATAATAAACCCAAAGTTGTTCTTTGCACTTGAACTATTCAAGACAAACAAGCTGCAGTTCAATATGAAGCACAATGATGGGAACATGCTCAGGATAAACAATCCTGAAGAAATGCAAAGAAAACTCATATTTGATGTTGTTAATGAGATTCTACTGCAAAAACTAATACTGGAGAGCCCTTCTCCACTGCGGTGTCTGCCAAATCAGCCAGAAGTAGTAGATCGCAAACTAAATGGACGGCAACTTCTAGATGAGCTTTGCACAGAAATTGATAATTTACAACCCAAAAACACAAACTTTGACTTGGATAATGAGGATGCGGATTTGACAAGTCTCTTATGGGGAGATTTGATGCATCAACCCACAATTTCAACAGAGTGCAACACTGAGATACCAAATGTTGTGTTGGATATTGAACGGTTGATCTTTAAAGATTTGATTACAGAAGTTGTGAGAGGTGAAGTAGCTAACCATCCAGGTAGGTATTGCAGACAACTGCTGTTTCCGAATTAG 2970 0.4145 MSSKKVMTTMKKEENPDLQKQMGCIRGFFHFFDHRHWFLTNNNYNNTSPPGVTNNEAKELNNKMLNAMASNNVKVARENQQFSTESSGTSNSSSSCSSSMSSLEFNRTILSQIRIQENSNSEAAVKQPNTPAHESLDFYDIVKDSMQREPRALSVKTAAKEETKGRILKHIDSPRPLQTPKSATITNEPLHILGRSRRKPWDSPRRSYDEREIQQLLKHKEIPRLSLDSRQGSNKGYNEATRSQNLLKDAETGYESSSTMLRQQQHEPETPKRPSSVVAKLMGLEELPDCTQTCDTPSQMSSISEGYNQHKSPVSPLTSKQSSVISRRDDALIRKATPYSRFSLEPIPWEQPDASQDSDLQVPKGSETSITASNSSHSVYGEIEKRIADLQFKNSGKDLRALKQILEAMQRYKDSLDITRDRETNYPSNKSLTESSKLRSPRQQNNTTVVTDDTTNSPRGRKFPIVIMKPAEISRKPNVATKDMINGKSGCIKFSTDGRLLDKLESQTAKGTSPANPLSQRFHSADKSNMMKTSKLMQASKVPQIINGEKTNNSSHTVETRSPRVQNKFGFERHSPINQSSESRSNRRQHKQSPESLSPSSTPRQKASTLQHRNEAFSKIRCQRRNFKHLVDIISSNVDSNRSIDSQRDIECTQAGHSGSNYSISFQEETNMNHNTTAKELSKESAMATVTVTSEQQSPVSVLDPRFYNEDPPSPIKKKIECSKDLDEALATSDNIGHASDVPLSFNNTKANFRNGTSDDDLQTQNLVQGLRQNDDNNEKFPNCRERKDSDRKYIAEILLASGLLSSPSSIQAVHSPGHIINPKLFFALELFKTNKLQFNMKHNDGNMLRINNPEEMQRKLIFDVVNEILLQKLILESPSPLRCLPNQPEVVDRKLNGRQLLDELCTEIDNLQPKNTNFDLDNEDADLTSLLWGDLMHQPTISTECNTEIPNVVLDIERLIFKDLITEVVRGEVANHPGRYCRQLLFPN 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272193g00004 989 MobiDBLite consensus disorder prediction 222 275 - -
Stsc272193g00004 989 MobiDBLite consensus disorder prediction 418 461 - -
Stsc272193g00004 989 MobiDBLite consensus disorder prediction 354 377 - -
Stsc272193g00004 989 MobiDBLite consensus disorder prediction 78 99 - -
Stsc272193g00004 989 MobiDBLite consensus disorder prediction 540 564 - -
Stsc272193g00004 989 Coils Coil 402 422 - -
Stsc272193g00004 989 MobiDBLite consensus disorder prediction 291 326 - -
Stsc272193g00004 989 MobiDBLite consensus disorder prediction 344 377 - -
Stsc272193g00004 989 Pfam Domain of unknown function (DUF4378) 792 968 IPR025486 -
Stsc272193g00004 989 MobiDBLite consensus disorder prediction 227 265 - -
Stsc272193g00004 989 MobiDBLite consensus disorder prediction 592 612 - -
Stsc272193g00004 989 MobiDBLite consensus disorder prediction 289 326 - -
Stsc272193g00004 989 MobiDBLite consensus disorder prediction 540 612 - -
Stsc272193g00004 989 PANTHER LONGIFOLIA PROTEIN 9 986 IPR033334 GO:0051513
Stsc272193g00004 989 MobiDBLite consensus disorder prediction 425 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272193g00004 Stsc-Chr272193 26703 30667 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272193g00004 129 975 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 30.273 1.01e-72 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272193g00004 - - ahf:112783057 1573.53