Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272192g00004 ATGGCGACGACGCCGTTTAACACTGGAAATGAGAACCATGGAGTTCATGTATGTAACAAATGTGGATGGCCTTTTCCAAATCCACACCCAAGTGCCAAACACAGGCGTGCTCACAAGAAAAACTGTGGAACCATTGAAGGTTACAAGCTTTTGAACCCTTCAGACGATGAACACTTTTCTGATGATGATCACAAAACACAAGGTCAAAAAGCTTTGGAGAGTGGTAAGAATGAGAAAGGTATTGATGGATTAGGTGGAGAATCAATTAGATCAAGAGATGAGCAGTTTTTGGATGCAATTGCGGAATGGGATAGTTCGGACTTGGCTACTGATCCAAAAATAATCCACAGAAAACATTTAGACTTTTCAGTGTCTTCTAAGGACAATGGTTCTAATGTCTATTATGCTCTGACCATACATTTCACAACTGCAGAAGAGAGTTCATCAATTTCCAAATCAAGAAATGATATTGTAGAGCAAAATCCTAAAATTTTGCAAAGTGAAACAGATGATGATTGTAACCTAAAGGAGTTGCAAGATTTGAAAACTGATGATTCTGTTGCTCTCACAAGTGACTCAAATACCGCCAAATTGGAAGCCATGTCTAATGTTTTTCTGGACAATAAGATCTATGTTGATGGAACGATGGAGGCGACTTTGAAAGAAAAGGATGAAACCAAACCAGATAGAGACATGTTTGAGATTGTAGTATCTTCTGACAGCATCATAGGTGGAACATTTGATGGAATATCCGGAATAGCAGTTACTGAAGTGGTTAACTCAAAATCTCAACTTACTGATGGAGCTTTTAGTCTGAAGGAAAATCACGCTGCTGCCTTCCCTTCTGTTATGCCCCAAGAAAATATTTTTGTTGAAGCAGGTTCTGCTCAGAGCATGAATAATTCCATAGATGGCATACAGCTAGAGTCAGAACACATGACAGTGCTTGCTACTTCCGGTAACGTCAAGATATCACATGAAAGGGAAGAAGAAAATGTTCATGTGCTTACATTTCCTTCATGTGATGATAGACCTGATGCAGCACACCCTCCGATTGGGTATGAATATCATGAACCAGTGGTTTCTCAAAATTCTGCAAGTCTAGATTCCTCTAAAGCATTGGTACAAGAGCATGATGACTTGAAGGATTCTGTTACTAAGGAAAATGATTTTCTTATCAACCAAGGCCAACCGAGCAAAAAAAGAGATCGCCAAGATGAAAGTAACAGAAGATTACATGAAACTGGAACCTCTATGAATGATATGAAAACTAAGAATGAGAGTCATGTGGTTCACTTTTCTGAAGAACAGGTAACCAGTGATGCCTATAAAAATTCACAACAGATTAATATACCCAAAGGTAGTTTAATGGGCGCATCGGATGAGAATGCCTGTGATGGAACCAGTCAAACAACTGCTGTAATTATCAGAGGCAATACAACTCATAACGAGGGAGACATAACCCGCATAGCTGTAGATGACGAGTGCAAAGGGGATAACAATGGAAATGATACTGGAATATGCATTAGCAATTGTCAATCCAGTAATGTGCTTTCAGAGATCAGTTCATCAAGTATATGTAATAATGAAGGTGGTGTTGAAATGGGTAACTTTGAACAATCTGATATAGCAGATACACAACATGCTGAAAGTGGTATTGTGAAAGATGCTACATTACCGGATAATTTTGAATCTACAATTCTTTCAGAGGTTGAATGCTCAAATAGAAGTCCAATATCTTGTAGTCAGAAGGAAATCAAAGATGAGAAAATCAGTAGCATTGATAGATCAAATGAAGACAGTAATATAGTTGCCAGTACTACTGCTGCTCCTCATCAAACACAAGATGAGGAACCATTACTTAAGGCTACAGAAGGCATTGACGTGTTAATTGAAGATTCCAATAGAATTGGTAGGGACCATTCTTTAAATATTGAACCTTCTAATCAGAGTGTTTCCCCTGTCGAAGATACTCAAGATGGACAGCATGACATTGACAAGAAAGTGCCTGGAGTTGTTGCTGTCCCAATTCAAGATCAAAGTGGTGTCCCTGTGCAATCTGATGCACAGGCTACTAATGAAGCGGAAGCTATAGCATCAACTGATTTGTCGGTATTAACAGAGACAGAAAAATCCAACTTGAAGTGCCCAGACGCTGCATCCGAGGAACAGCAGCATGAAAAATCCGAAATGTTTGAACCACCTTCATTCATGACATTGGTCGAACCTGGACTCATGGTTGGCCCAAATTCTACACCTGAAGTTGAGACAGATCAGAACAAGCAGAGACCTGATTCTAGCTCTTCACAGGCTGCTTGGTTTCCTACTCTAACTCACATTGCTAATGAGTCTGAAGGGAGAAAGAGGAATGAAGAAATAATAGCCAAGGTAACAAGTAAGCAGAACACACCTCTGAAGAGTCTCTTGGCTGAGGCTGCCCATAACAACAAAAAGTCAAAGTCTCCCAAATCAGATAAAGATTCTGCGAATCAGAAACGTGTTAGAGTAGCAGAAGATAATGGTTCTGGATTGATGACTGTTAACTCCATTCTTGGTTGTGAATCTCCCGCTATGCAGATTATGAACCGAGAGAGTACAGAAGAATGGAACTCTCCGGCTGACATCAGGAGAGAAAAGAAGAAAGCCAAGAGCAGATCACACTGGATACAATTGTTGTGTTGCTCATCTGTCGAAACTCGGTGA 2703 0.3992 MATTPFNTGNENHGVHVCNKCGWPFPNPHPSAKHRRAHKKNCGTIEGYKLLNPSDDEHFSDDDHKTQGQKALESGKNEKGIDGLGGESIRSRDEQFLDAIAEWDSSDLATDPKIIHRKHLDFSVSSKDNGSNVYYALTIHFTTAEESSSISKSRNDIVEQNPKILQSETDDDCNLKELQDLKTDDSVALTSDSNTAKLEAMSNVFLDNKIYVDGTMEATLKEKDETKPDRDMFEIVVSSDSIIGGTFDGISGIAVTEVVNSKSQLTDGAFSLKENHAAAFPSVMPQENIFVEAGSAQSMNNSIDGIQLESEHMTVLATSGNVKISHEREEENVHVLTFPSCDDRPDAAHPPIGYEYHEPVVSQNSASLDSSKALVQEHDDLKDSVTKENDFLINQGQPSKKRDRQDESNRRLHETGTSMNDMKTKNESHVVHFSEEQVTSDAYKNSQQINIPKGSLMGASDENACDGTSQTTAVIIRGNTTHNEGDITRIAVDDECKGDNNGNDTGICISNCQSSNVLSEISSSSICNNEGGVEMGNFEQSDIADTQHAESGIVKDATLPDNFESTILSEVECSNRSPISCSQKEIKDEKISSIDRSNEDSNIVASTTAAPHQTQDEEPLLKATEGIDVLIEDSNRIGRDHSLNIEPSNQSVSPVEDTQDGQHDIDKKVPGVVAVPIQDQSGVPVQSDAQATNEAEAIASTDLSVLTETEKSNLKCPDAASEEQQHEKSEMFEPPSFMTLVEPGLMVGPNSTPEVETDQNKQRPDSSSSQAAWFPTLTHIANESEGRKRNEEIIAKVTSKQNTPLKSLLAEAAHNNKKSKSPKSDKDSANQKRVRVAEDNGSGLMTVNSILGCESPAMQIMNRESTEEWNSPADIRREKKKAKSRSHWIQLLCCSSVETR 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272192g00004 900 MobiDBLite consensus disorder prediction 813 834 - -
Stsc272192g00004 900 ProSitePatterns Zinc finger C2H2 type domain signature. 18 38 IPR013087 -
Stsc272192g00004 900 MobiDBLite consensus disorder prediction 816 834 - -
Stsc272192g00004 900 MobiDBLite consensus disorder prediction 744 787 - -
Stsc272192g00004 900 MobiDBLite consensus disorder prediction 641 658 - -
Stsc272192g00004 900 MobiDBLite consensus disorder prediction 715 730 - -
Stsc272192g00004 900 MobiDBLite consensus disorder prediction 752 777 - -
Stsc272192g00004 900 MobiDBLite consensus disorder prediction 397 421 - -
Stsc272192g00004 900 MobiDBLite consensus disorder prediction 385 421 - -
Stsc272192g00004 900 MobiDBLite consensus disorder prediction 638 664 - -
Stsc272192g00004 900 MobiDBLite consensus disorder prediction 582 596 - -
Stsc272192g00004 900 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 3 897 - -
Stsc272192g00004 900 MobiDBLite consensus disorder prediction 709 731 - -
Stsc272192g00004 900 MobiDBLite consensus disorder prediction 53 87 - -
Stsc272192g00004 900 MobiDBLite consensus disorder prediction 53 77 - -
Stsc272192g00004 900 MobiDBLite consensus disorder prediction 578 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272192g00004 Stsc-Chr272192 26113 30347 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc272192g00004 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272192g00004 - - aip:107638253 1120.92