Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272191g00001 ATGGTTGCGCAGGTTGAAGGTGCGGCCGCTCTTATTCAGAGCTCGATTGTTCTCGTTGACGTCGATTCTGAGTTTTCGATGGTTCCGAGGACGGAAAAGGGCTCTGAGCTCGAAATGCCGGCGAGGAACAGTGGCGAAAAGGGAGGGAAGAAGAATCGGGCGAAGGATACGCCGGTGCAGCGCAGAGCCAGTGCGAGAATCCAAGCGGCGAAGCAAAAGGCGGAGGAGGAGGAGCAAGCTCGCCGTGGAGCGGATGCAGTAGAAGAAGAGAAAGAGAAATGCGTGAAAGTGGCGAAGAAAGGGAGCAAGAAGCGCGTGAGGAATGGGGAGAGCTTAGGCGAGGGAGTGGGAGAGGTTGTTGTTGGTGGTGGTGGTGCTTCGCCAAAGAAGGGGAAAGAGGGTAGTGGAAGCGATGAGACTGTTGCGGAGGGAGAGGGTGAGCCGAAGAAGCTGAAGATGGCAGTGGATTCTGACAATGCTGTTGCGGGTTCTTCTGAAAATAAAGGAGCTGCCTTAAGGGTGAAGGAGACGATTAGGGTCTACAACAAGTATTACCTTCATTTTGTTCAGGAGGAAGAGAAGAGATGCGCAAAAGTGAATGCTGAAAGGAAAGCTACTAAGCAGTCAAAGTCTTCAAAATCGAAGAAAGGGAAAGAACCTGAAGCTAAGAAAGCTCATCAACGACCTGATCTAAAGGCATTATCCAAGATGATGGCGAGTAATGAGATATTGTACCCTGAGAAAAGAGTTGGTCACCTTCCAGGTATTGAAGTTGGGCATCAGTTCTATTCTCGAGGTGAAATGGTTGCTGTTGGTTTTCATCATCATTGGTTAAATGGCATTGATTATATGGGCAGATCCTATGAAAAAGTGAGCAGCACTTATGAATTCCCTGTTGCTGTGGCTATTGTTTTGTCGGGCCAGTATGAAGATGATCTTGATAATGCTGATGATGTTGTGTATACTGGCCAAGGTGGACATAACTTGACAGGTGATAAGCGCCAAATTAAAGACCAAAAGTTAGAGCGGGGTAACTTAGCACTCAAGAATTGTATTGCTCAGTCTGTGCCTGTCAGGGTGATTCGTGGTCATAGTAAAGCTTCAAACGGTGCTACTAAAATCTATACATATGACGGATTGTACCAGGTTGTCAAGTATTGGGCAGAAAAGGGAATATCTGGATTTACAGTGTACAAATTCCGACTTAGGAGGATAGAAGGCCAGCCAGTATTAACCACAAATCAGGTTTATTTCACTCGTGGGCGTGTACCGCAGTCTACTGCAGAAATACGAGGGTTGGTATGTGAGGATATAACTGGAGGTCAAGAAAGTATTCCTATTCCTGCTACAAATTTGGTTGATGATCCTCCTGTTGCACCAACGGGTTTTACGTATTGCAACTCTGTTAAGGTTGCAAAAAATGTAAAGTTTCCCAAAGCTGCTGTTGGATGCAAATGCAAGGGCCTCTGTATTGACTCTACAACATGTGAATGTGCATTGCGTAATGGATCTGAATTTCCCTACGTAGCACAGAATGGTGGCAGGTTAGTTAAAGCTAAAGATGTTGTCTTTGAATGTGGTCCCAACTGTGGCTGTGATGCAACTTGTGTGAACCGGACTTCTCAGAAAGGGATTCGATATCGTCTGGAGGTTTTCCGTACTGCAAAGAAAGGATGGGCTGTTAGATCATGGGATTTTATACCAGCTGGAGCACCAGTTTGTGAGTACACAGGAATACTTGCTAGGACTGAAGATATGGACAGTGTATTGGAGAATAATTATATTTTCGAGATAGATTGCTTACAAACAATCAAGGGTATTGGTGGAAGAGAGAGGCGATCGCAAAGTACTAAATATCCATCAAATCTTTTGGATAAATATGAAGACCACGGTTCAGAAGGTGCACCAGAATATTGTATTGACGCTGGATCCACCGGCAATATTGCTAGGTTTATCAACCACTGTTGTGAGCCTAATTTGTTTGTTCAATGTGTCCTGAGCACCCACCATGACTTGAAATTTGCCCGAGTAATGCTGTTTGCTGCTGACAACATACCCCCACTGCAGGAGCTGACATATGACTACGGTTACGAGCTTGATAGTGTATTGGGTCCTGATGGAAAGATTAAACAAGTGACTTGTTATTGTGGAGCTCCTAGTTGCAGGAAGAGATTATTCTAA 2181 0.4516 MVAQVEGAAALIQSSIVLVDVDSEFSMVPRTEKGSELEMPARNSGEKGGKKNRAKDTPVQRRASARIQAAKQKAEEEEQARRGADAVEEEKEKCVKVAKKGSKKRVRNGESLGEGVGEVVVGGGGASPKKGKEGSGSDETVAEGEGEPKKLKMAVDSDNAVAGSSENKGAALRVKETIRVYNKYYLHFVQEEEKRCAKVNAERKATKQSKSSKSKKGKEPEAKKAHQRPDLKALSKMMASNEILYPEKRVGHLPGIEVGHQFYSRGEMVAVGFHHHWLNGIDYMGRSYEKVSSTYEFPVAVAIVLSGQYEDDLDNADDVVYTGQGGHNLTGDKRQIKDQKLERGNLALKNCIAQSVPVRVIRGHSKASNGATKIYTYDGLYQVVKYWAEKGISGFTVYKFRLRRIEGQPVLTTNQVYFTRGRVPQSTAEIRGLVCEDITGGQESIPIPATNLVDDPPVAPTGFTYCNSVKVAKNVKFPKAAVGCKCKGLCIDSTTCECALRNGSEFPYVAQNGGRLVKAKDVVFECGPNCGCDATCVNRTSQKGIRYRLEVFRTAKKGWAVRSWDFIPAGAPVCEYTGILARTEDMDSVLENNYIFEIDCLQTIKGIGGRERRSQSTKYPSNLLDKYEDHGSEGAPEYCIDAGSTGNIARFINHCCEPNLFVQCVLSTHHDLKFARVMLFAADNIPPLQELTYDYGYELDSVLGPDGKIKQVTCYCGAPSCRKRLF 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272191g00001 726 MobiDBLite consensus disorder prediction 30 152 - -
Stsc272191g00001 726 SUPERFAMILY SET domain 432 703 IPR046341 -
Stsc272191g00001 726 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 19 726 IPR025794 GO:0016571
Stsc272191g00001 726 SMART G9a_1 246 408 IPR003105 -
Stsc272191g00001 726 ProSiteProfiles Post-SET domain profile. 710 726 IPR003616 -
Stsc272191g00001 726 SUPERFAMILY PUA domain-like 233 425 IPR015947 -
Stsc272191g00001 726 Pfam Pre-SET motif 439 539 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc272191g00001 726 Coils Coil 189 209 - -
Stsc272191g00001 726 MobiDBLite consensus disorder prediction 132 152 - -
Stsc272191g00001 726 Gene3D SET domain 428 726 IPR046341 -
Stsc272191g00001 726 MobiDBLite consensus disorder prediction 200 232 - -
Stsc272191g00001 726 ProSiteProfiles Pre-SET domain profile. 482 544 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc272191g00001 726 SMART set_7 547 702 IPR001214 GO:0005515
Stsc272191g00001 726 Pfam SAD/SRA domain 250 408 IPR003105 -
Stsc272191g00001 726 Pfam SET domain 558 696 IPR001214 GO:0005515
Stsc272191g00001 726 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 49 719 - -
Stsc272191g00001 726 Gene3D - 234 421 IPR036987 -
Stsc272191g00001 726 Coils Coil 60 93 - -
Stsc272191g00001 726 MobiDBLite consensus disorder prediction 68 97 - -
Stsc272191g00001 726 ProSiteProfiles SET domain profile. 547 696 IPR001214 GO:0005515
Stsc272191g00001 726 SMART PostSET_3 710 726 IPR003616 -
Stsc272191g00001 726 SMART preset_2 435 531 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc272191g00001 726 MobiDBLite consensus disorder prediction 200 231 - -
Stsc272191g00001 726 ProSiteProfiles YDG domain profile. 251 404 IPR003105 -
Stsc272191g00001 726 MobiDBLite consensus disorder prediction 30 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272191g00001 Stsc-Chr272191 2851 13824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272191g00001 237 726 EF-hand Containing Proteins AT5G13960 66.329 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc272191g00001 SAD_SRA 1.1e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272191g00001 K11420 - gmx:100795584 939.873