Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272189g00011 ATGGCCATATTGTTTCTCATTCTACCAATCTTCCTATTCCTATATGTTCTTCATCGTAGAAGATGTTGCAAAACCCCTCTCTTTATAGATTGGCCAATCCTTGGCATGTTACCACAACTCCTTAGCAACTTGTGGCAAATCCATGATTATGCAACAAATGTTTTGAGACAACATGGTGGCACGGGTGAATTCATGGGACCATGGTTCACCAAAATGAACTATATGGTCACTAGTGACCCCTTGAATGTTCATCACATAATGAGCAAAAGATTTGACAACTATGTTAAGGGCCCCGAATTTCGCGAGATCTTCCAAGCCTTCGGAGACGGTATTGTGGCTTCAGATTCTGGGACATGGAAATACATTAGAACCTTGCAACATTCCCTGTTCCGGCGAAAGAGTTTCGAGAAAATGGCCGAAAAAACAATCAGGAAGAAGGTTCAGAATAGCTTGCTTCCGATATTTGATCATGCATGGTTACATGGAAAGGTTTTGGATCTTCAAGATGTGTTTAGTCGATTAACGTTCGACGAGACGTCCATCATGGTTTTAGGACATGATCCTAATAGTCTCTCAGTTGGATTTCCATTGGTCGAAACTGAGAAGGCCTTTGACGAAATTGAAGAGTCCATATTCTATAGGCACAGCGTGCCAAGAAGTGTTTGGAAGTTTCAAGAATGGCTTCAAATTGGTGAGGAGAAAAAGATGACAAAGGCATGCAAAAATTTTGACCAATTTCTATATTCAAGCATAGCAACTAAGCACCAAGAACTAAGTAAATGCAACAAAAGTCATGAAAAGTGTGATAATCAAGCTCATCAATTTGATGACTTGATTAGTGCTATGATGATGATGAATGAAGAAAAGGGCAAAGTGGTCCATGATGATAAGTTTCTAAGAGATGCGGCATTCAATCTTTTTGTAGCTGGAAGAGACACCATAACTTCAGCTCTTACATGGTTTTTCTGGCTTGTTGCAACACACCCATTAGTAGAGGCCAAGATTCTTGAAGAAATCGAAGAAAACTTTGGCATCGCTGACAGGGAGAAATGCGAAATTTTAGGGATGGAAGAGGTGAAGAAGCTAATTTATTTACATGGGGCTCTATGTGAAGGTTTGAGACTATTTCCACCCGTTCCTATTGAACGTAAGAAACCGCTGAAATGTGATACACTTCCAAGTGGTCATCATGTTAATCCAAATACCACTATTTTGTTGTTTACTTATGCAATGGGAAGGTTTGAAGAGATATGGGGAAAAGATTGCTTGGAGTTCAAGCCAGAGAGATGGATTTCAGAAAAAGGAGAAATAATATATGTTTCTTCGTATAAATTTATTAGTTTTAATGCAGGTCCTAGAACATGCTTAGGAAAAGACTTGTCTTTTCTTCAAATGAAAATGGTGGCATCTACTATTTTGCGCAATTATTGTATACAAGTGGTGGAAAATCATTCCACTATGCCAGCTCATTCCATTGTGCTTCTTATGAAGCATGGCTTGAAG 1503 0.3912 MAILFLILPIFLFLYVLHRRRCCKTPLFIDWPILGMLPQLLSNLWQIHDYATNVLRQHGGTGEFMGPWFTKMNYMVTSDPLNVHHIMSKRFDNYVKGPEFREIFQAFGDGIVASDSGTWKYIRTLQHSLFRRKSFEKMAEKTIRKKVQNSLLPIFDHAWLHGKVLDLQDVFSRLTFDETSIMVLGHDPNSLSVGFPLVETEKAFDEIEESIFYRHSVPRSVWKFQEWLQIGEEKKMTKACKNFDQFLYSSIATKHQELSKCNKSHEKCDNQAHQFDDLISAMMMMNEEKGKVVHDDKFLRDAAFNLFVAGRDTITSALTWFFWLVATHPLVEAKILEEIEENFGIADREKCEILGMEEVKKLIYLHGALCEGLRLFPPVPIERKKPLKCDTLPSGHHVNPNTTILLFTYAMGRFEEIWGKDCLEFKPERWISEKGEIIYVSSYKFISFNAGPRTCLGKDLSFLQMKMVASTILRNYCIQVVENHSTMPAHSIVLLMKHGLK 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272189g00011 501 Gene3D Cytochrome P450 18 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00011 501 PANTHER CYTOCHROME P450 20 500 - -
Stsc272189g00011 501 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506|GO:0016705
Stsc272189g00011 501 Pfam Cytochrome P450 30 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00011 501 CDD CYP86A 63 500 - -
Stsc272189g00011 501 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00011 501 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00011 501 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00011 501 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00011 501 PRINTS P450 superfamily signature 367 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00011 501 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00011 501 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00011 501 PRINTS P450 superfamily signature 455 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00011 501 SUPERFAMILY Cytochrome P450 15 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272189g00011 Stsc-Chr272189 48756 50258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272189g00011 1 501 Cytochrome P450 AT4G32170 44.643 1.23e-152 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272189g00011 - - gmx:100780625 687.567