Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272189g00004 ATGGCCGTGTTGTTTCTCTATGTAGCAACAATAATTGTGTCATCCTTCCTATTCCTATATGTTCATCATCATAGAAGAAATTCTTGTAGAACCCCTCTCTTGATAGATTGGCCAATCCTTGGCATGTTACCACAATTGCTTGGCAATTTGTGGCAATTCCACGATTATGTAACAAATCTTCTGAGACAAAAAGGTGGCACCGGTGAATTCATGGGACCATGGTTCACTAACATGAACTATATCTTCACTTGTGACCCCTTAAATGTTCATCACATAATGAGCGAAAACTTTGACAACTATGTCAAGGGCTCCAACTTTCAAGAGATCTTCGAACCTTTTGGAGGCGGTTCTGTCGCTGCAGATTCCGAGACGTGGAAATACAGAAGGGCCTCAATGCAGTCCATGATGCGAAAAATGAGTTTCGAGAGAATGTCGGAGAAATCTATTCAGAAGAAGCTCCAGAATTGCTTGCTTCCAATACTTGATCATGCATGTTCGCATGAAAAGGTTTTGGATCTTCAAGAAGTGTTTAGTCGACTAATGTTCGACGAGACATCCATCATGATTTTAGGATATGATCCTAAAAGTCTCTCAATTGAATTTCCATTGATTAAAGCTGAGAAGGCTTTCAAAGAAGTTATGGAGTCCATCTTCTATCGGAACACGGTGCCAATAAGTGTTTGGAAGTTTCAGAAATGGCTTCAAATTGGTAACGAAAAGAAGTTGACAGAAGCGTGCAAAGTTTTTGACCAATTTCTATATTCACACATTTCAGAAAAGCGCCAAGAGTTAATAATAAGCAAATGCAACAAAAGTAGTGATGATGACTCCTTGCTGAGTGACATAATGATGACCACTGACCAAAATGGCAAAATGGTGTTTGATGATGATAAGTTTGTAAGAGATGTTGCATTCAATCTTTACGCAGGTGGAAGAGATACTATAACTTCGGGTCTTACATGGTTTCTTTGGCTTGTTGCAACACACCCGTCAGTGGAGGCCAAGATTCTCGAAGAAATTAAAGAAAATTTTGATGCCATTGACGGGAAGAAACGCAAAGTTTTAGGGATTGAGGATGTGAAGAAGCTAATTTACCTACATGGTGCTCTATGCGAAAGTTTGAGGCTATTTCCTCCTATCCCTATTGAACGTAAGCAATCATTGAAATCTGATACACTTCCTAGTGGTCATCGTATTAGTCCAAATACCTCTATTATCTTGTTTACTTATGCCATGGGAAGGTTTGAAGAGGCATGGGAAAAAGATTGCTTGAAATTCAAACCAGAGAGATGGATTTCAGAAAAAGGAAAAATAAAGCATATTTCATATTATAAGTTTTTTAGTTTTAATGCAGGTCCTAGAATATGTTTGGGAAAAGATGTTGCTCTTTTTCAAATGAAAATAGTGGCAGCTGCTATTTTGCGCAACTATCATATACAAGTGGTGGAAAATCATCCTGTTACCCCAGCTCAATCAATTTTGCTTCTTATGAAGCATGGTTTGAAGGTTAACATAGCAAGAAGACAAGTTTAA 1533 0.3829 MAVLFLYVATIIVSSFLFLYVHHHRRNSCRTPLLIDWPILGMLPQLLGNLWQFHDYVTNLLRQKGGTGEFMGPWFTNMNYIFTCDPLNVHHIMSENFDNYVKGSNFQEIFEPFGGGSVAADSETWKYRRASMQSMMRKMSFERMSEKSIQKKLQNCLLPILDHACSHEKVLDLQEVFSRLMFDETSIMILGYDPKSLSIEFPLIKAEKAFKEVMESIFYRNTVPISVWKFQKWLQIGNEKKLTEACKVFDQFLYSHISEKRQELIISKCNKSSDDDSLLSDIMMTTDQNGKMVFDDDKFVRDVAFNLYAGGRDTITSGLTWFLWLVATHPSVEAKILEEIKENFDAIDGKKRKVLGIEDVKKLIYLHGALCESLRLFPPIPIERKQSLKSDTLPSGHRISPNTSIILFTYAMGRFEEAWEKDCLKFKPERWISEKGKIKHISYYKFFSFNAGPRICLGKDVALFQMKIVAAAILRNYHIQVVENHPVTPAQSILLLMKHGLKVNIARRQV 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272189g00004 510 Gene3D Cytochrome P450 21 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00004 510 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00004 510 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00004 510 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00004 510 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00004 510 SUPERFAMILY Cytochrome P450 36 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00004 510 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00004 510 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00004 510 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00004 510 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00004 510 PANTHER CYTOCHROME P450 24 503 - -
Stsc272189g00004 510 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Stsc272189g00004 510 Pfam Cytochrome P450 36 500 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272189g00004 510 CDD CYP86A 69 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272189g00004 Stsc-Chr272189 15595 17127 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272189g00004 1 508 Cytochrome P450 AT4G32170 43.811 4.12e-152 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272189g00004 - - gmx:100780625 621.313