Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272187g00002 ATGAACCTTCTTCCAATGATTCTCTCTATGTTCCTCATTCTTCTTCACCGTGCAGATGCACAATCACAACACCACCCTCCTTTTCATTCTCCTACACCAGCACCTGCACCTGCACCTTCACATGTTCCTGTTTCTCAATCCATTGCTCCACATTCCATGATCCCTGCATTCTCCCCTGGATTTCAGGAACAACAGCACCGAAGAGGTTCACACAACAAAGTGCTTATCTCTGTGGCTGTGGCTTCAGCTGCAGTTGGTGCAGTCCTTCTCACTTTGCTATGCTTCTGGATTTGCCATTGCAAGCGTAGCTCAAAATCAAGCAAGAAGAATCAGAATCTTCACATCTCAGTGGAGAAAGGGATCATGGGAATGAAGACGGTTGGTATGAAAGGTTGTGCTCCAATCATTGATTATAAGCAAATAGAGAAAAGCACGAATCAGTTTGATGAAAGTAACATCTTGGGTGAAGGAGGCTTTGGATGTGTTTACAAGGCTCGTTTCGATGATAATCTTGTTGTTGCTGTCAAGAAGCTACACTGTCAAACTCAAAATGCTGAGAGAGAATTCGAGAATGAGGTTGAATTGTTGAGCAAAATTCAGCATCCGAATATAATTCCTCTGCTGGGATGTAGCATTGATGGGGATACCAGGTTCATTGTTTATCAGTTGATGCAAAATGGATCCTTGGAAGCTCAGTTACATGGACCTACTAGAGGGTCTGCATTGACTTGGAACATGAGGATGAAGATTGCTCTTGACACAGCAAGAGGATTAGAATATCTACATGAGCACTGTCACCCTCCTGTTATTCATAGAGACATGAAATCCTCCAATATTCTTTTGGATGCAAACTTCAATGCCAAGCTATCTGATTTTGGGCTTGCCATAACTGATGGGTCCCAAAGCAAGAAGAACATTAAGCTTTCAGGCACGTTGGGGTATGTAGCCCCGGAGTACCTTCTAGATGGGAAATTAACAGATAAAAGCGATGTGTATGCGTTTGGGGTTGTACTTCTTGAACTTCTACTGGGAAGGAAGCCTGTGGAGAAACTGGCACCAGCTCAATGCCAATCTATTGTCACATGGGCTATGCCAGCATTGACAGACAGAAGCAAACTTAGGAACATTGTGGATCCAGTGATCAAAGATACAATGGATGTGAAGCACTTATATCAAGTTGCTGCTGTTGCTGTGCTGTGTGTTCAGCCAGAGCCAAGTTACCGTCCCTTAATCACCGATGTTCTTCATTCACTTGTGCCTCTTGTTCCCATTCATCTTGGAGGAACACTCAGATCATCATCAGTTTCTGTTTCTGATTGA 1320 0.4356 MNLLPMILSMFLILLHRADAQSQHHPPFHSPTPAPAPAPSHVPVSQSIAPHSMIPAFSPGFQEQQHRRGSHNKVLISVAVASAAVGAVLLTLLCFWICHCKRSSKSSKKNQNLHISVEKGIMGMKTVGMKGCAPIIDYKQIEKSTNQFDESNILGEGGFGCVYKARFDDNLVVAVKKLHCQTQNAEREFENEVELLSKIQHPNIIPLLGCSIDGDTRFIVYQLMQNGSLEAQLHGPTRGSALTWNMRMKIALDTARGLEYLHEHCHPPVIHRDMKSSNILLDANFNAKLSDFGLAITDGSQSKKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLAPAQCQSIVTWAMPALTDRSKLRNIVDPVIKDTMDVKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLVPLVPIHLGGTLRSSSVSVSD 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272187g00002 439 Gene3D Phosphorylase Kinase; domain 1 106 222 - -
Stsc272187g00002 439 CDD STKc_IRAK 154 421 - -
Stsc272187g00002 439 SMART serkin_6 148 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272187g00002 439 SUPERFAMILY Protein kinase-like (PK-like) 133 418 IPR011009 -
Stsc272187g00002 439 Pfam Protein kinase domain 149 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272187g00002 439 ProSitePatterns Protein kinases ATP-binding region signature. 154 177 IPR017441 GO:0005524
Stsc272187g00002 439 Gene3D Transferase(Phosphotransferase) domain 1 224 423 - -
Stsc272187g00002 439 FunFam Protein kinase superfamily protein 116 223 - -
Stsc272187g00002 439 PANTHER OS01G0750732 PROTEIN 42 423 - -
Stsc272187g00002 439 ProSiteProfiles Protein kinase domain profile. 148 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272187g00002 439 FunFam probable receptor-like protein kinase At1g80640 224 423 - -
Stsc272187g00002 439 MobiDBLite consensus disorder prediction 23 42 - -
Stsc272187g00002 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272187g00002 Stsc-Chr272187 39199 42445 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272187g00002 135 422 Receptor kinase-like Gene Family AT3G58690 49.320 2.24e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Stsc272187g00002 Pkinase 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272187g00002 - - ahf:112784689 723.776