Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272187g00001 ATGGCCAGAGCACAACAAAGATACCGAGGTGTCCGTCAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATTCTGAAAACAAGGATATGGCTTGGAACATTTGAGACAGCAGAAGATGCAGCAAGAGCTTATGATGAAGCAGCAAGATTGATGTGTGGGACAAGAGCCAGAACCAACTTCCCTTACAACCCAAATGCCTCTCATTCAACACCATCAAAGCTTCTCTCTGCTACTTTAACTGCTAAGCTTCACAGGTGTTACATGGCATCACTTCAAATCACTAGGCCTTCATCTCTTCCTTCGCCATTACCTTCTTCTTCTTCTTCTAATGGATTTTCCACTGCATCAAACCCACACGATGAAAGTGGCGTTCTGTTTTCACCTCAGAAGAGACCACACAAGGAGGAACAATTACAATCACAATCACAACAACAAGTACAATGTTCATCTTCATCATCATCATCAGATGGGAATAACTGGGTTATGATGAAGAAGGTTAAAGTGGAGAATAATGATGAAGACTTTATTAAGCCTCTTGAAGAAGATCACATTGAGCAAATGATTCAGGAGTTGCTTCATTATGGCTCCGTTGAGCTCTGTTCTCTTTAA 618 0.4272 MARAQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASHSTPSKLLSATLTAKLHRCYMASLQITRPSSLPSPLPSSSSSNGFSTASNPHDESGVLFSPQKRPHKEEQLQSQSQQQVQCSSSSSSSDGNNWVMMKKVKVENNDEDFIKPLEEDHIEQMIQELLHYGSVELCSL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272187g00001 205 MobiDBLite consensus disorder prediction 99 163 - -
Stsc272187g00001 205 MobiDBLite consensus disorder prediction 141 163 - -
Stsc272187g00001 205 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Stsc272187g00001 205 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Stsc272187g00001 205 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Stsc272187g00001 205 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Stsc272187g00001 205 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Stsc272187g00001 205 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Stsc272187g00001 205 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Stsc272187g00001 205 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 147 - -
Stsc272187g00001 205 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Stsc272187g00001 205 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Stsc272187g00001 205 MobiDBLite consensus disorder prediction 99 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272187g00001 Stsc-Chr272187 17680 18619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272187g00001 1 205 AP2-EREBP Transcription Factor Family AT5G25190 58.049 5.98e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc272187g00001 AP2 7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272187g00001 - - adu:107470449 241.891