Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272185g00005 ATGGCTTCCGCAGCCTCTCCAAGAATACCCACCGAGACGTTGAAGAGCGCCGTAGAGGCTCTCCTGAAATGGCGAGATTCCACTTCCGAGTCTCACAAACCCAAACTCTTCGACGCCGACGAAGAATTCCTCTACTTAGTCCTCACTCTCAAAACCATCCCTCACAAATCTCGCGTTAACCCTTACAAGATCCCTTTACCTCACACTCTCCTCTCTCCCTTCTCCGAAACCTGCCTCATCATCGACGATAGGTCAAAATCGAAACTCACTAAGCAAGAAGCACAGAAGAAGATCAAAGCCGAAAACGTCGCCGTTTCGAAGGTTCTCAAGTTGTCGAAGCTTGCCTCCGATTATCGCCCTTTCGAGGCAAAGCGGAAGCTCTGCGATTCGTACGATGTCTTCTTCACTGATAAGAGAGTGGTGCCTTTGTTGCCCAGGCTGTTAGGGAAGAACTTCTTTAGGAAGAAGAAGGTTCCGGTGCAGGTGGATTTGACTAAGAAGAATTGGAAGGAGCAGGTGGATAGGGCGTGTTCGTCGGCGCTGTTGTTCATCGGAACGGGGACTTGTTGTGTTTTGAAGGTCGCCAAGGTTTCCATGGAGAGGGAGGAGATTGTTGAGAATGTGATTGCTGCTATTGAGGGGGTTGTCGAGGTTTTGCCGAAGAACTGGGCCAATGTGAGGTCCTTGCATGTTAAGCTTTATGAGTCGCTGGCGCTGCCGGTTTATCAGGCTGTTCCGGAGGTGAAGTTGAGGATTGAGGGAAGTAAGGCTGAGGAGTTGGAGAAAGAGAAGCAGAAGAAGAAGGAAGAGGCGGAGGAAGAGGGCAAAGATGTTAGCGGCGCGAAGGTGGTAAAGAAGAAGGGGAGGATTCATGAAGTTAGATACATGGATAGCGAAGTTGGTGAGGATAATGTTGAAGATGTGGCAGGTAGTGAGGATGATGGTGTTGTTATGGAGGAAGATTCGGATAATGCTGAAGAAGGTGCTGGAGAATTGGTGAATAAGAAGAAGAGGAAGAAAGGTGTGAAAGCAAGGAAAGGGGCTTTGAGTGAGTTGAGCAGTGTCAAAGAATTGAAGAAATCTGTTAAGAAAATTAGTAAAGAGAAGAAATCCTCGAAAGTGATGAAGGAAAATTCCGTCAAGAAGAGTCATAATAATGAATTATCTGTTGAGCATGCAGATTCAGGAAAGAAGACGACCAAGAAGAAACTTTCGCCATTGAAGTCAGGAGAAGCTGATTTGAAAAGGAAAGTGAGGGCTAAGAAAAGCAAGAAAGCTGCTTAA 1284 0.4688 MASAASPRIPTETLKSAVEALLKWRDSTSESHKPKLFDADEEFLYLVLTLKTIPHKSRVNPYKIPLPHTLLSPFSETCLIIDDRSKSKLTKQEAQKKIKAENVAVSKVLKLSKLASDYRPFEAKRKLCDSYDVFFTDKRVVPLLPRLLGKNFFRKKKVPVQVDLTKKNWKEQVDRACSSALLFIGTGTCCVLKVAKVSMEREEIVENVIAAIEGVVEVLPKNWANVRSLHVKLYESLALPVYQAVPEVKLRIEGSKAEELEKEKQKKKEEAEEEGKDVSGAKVVKKKGRIHEVRYMDSEVGEDNVEDVAGSEDDGVVMEEDSDNAEEGAGELVNKKKRKKGVKARKGALSELSSVKELKKSVKKISKEKKSSKVMKENSVKKSHNNELSVEHADSGKKTTKKKLSPLKSGEADLKRKVRAKKSKKAA 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272185g00005 427 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 17 236 - -
Stsc272185g00005 427 SUPERFAMILY Ribosomal protein L1 12 242 IPR023674 -
Stsc272185g00005 427 CDD Ribosomal_L1 14 241 IPR028364 -
Stsc272185g00005 427 MobiDBLite consensus disorder prediction 295 427 - -
Stsc272185g00005 427 Pfam Ribosomal protein L1p/L10e family 34 236 IPR028364 -
Stsc272185g00005 427 MobiDBLite consensus disorder prediction 259 281 - -
Stsc272185g00005 427 Gene3D - 87 179 IPR016095 -
Stsc272185g00005 427 MobiDBLite consensus disorder prediction 350 417 - -
Stsc272185g00005 427 MobiDBLite consensus disorder prediction 302 327 - -
Stsc272185g00005 427 FunFam Ribosomal protein L1p/L10e family 87 178 - -
Stsc272185g00005 427 Coils Coil 250 277 - -
Stsc272185g00005 427 Gene3D - 183 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272185g00005 Stsc-Chr272185 13092 15136 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272185g00005 130 232 Cytoplasmic Ribosomal Protein Gene Family AT2G27530 29.126 2.32e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272185g00005 K14775 - ahf:112697689 577.785