Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272184g00008 ATGCATGATTTGCGAATGATCCACACTGACCTGAAGCCTGAAAACATACTTCTAGTTTCTCCCGAGTATGTTAAAGTTCCTGATTACAAGAGTTCATCAAGATCACCAAGTTCTTATTTCAAGAGAGTGCCCAAGTCAAGTGCTATAAAGGTTATTGATTTTGGCAGCACTACTTATGAGCGAGAAGATCAGAGTTACATTGTATCAACTCGACACTATAGGGCACCAGAAGTTATCATTGGACTGGGATGGAGTTACCCATGCGATATATGGAGTGTGGGGTGTATATTGGTTGAGTTATGCACGGGTGAAGCTTTGTTTCAGACCCATGAGAATTTAGAGCACCTTGCCATGATGGAGAGGGTGCTTGGACCATTACCTCAGCACATGCTAAAGAGAGTAGACCGACATGCGGAGAAGTATGTTAGAAGAGGTAGATTAGACTGGCCAGAGGGTGCAACTTCCAGGGAGAGTATTAAAGCTGTTATGAAGCTTCCTAGGCTACAGAACCTTATCATGCAGCATGTTGATCACTCGGCTGGCGATCTTATACACCTCTTGCAGGGGTTGCTTAGATATGACCCCTCAGAAAGACTTACAGCCAGGGAAGCTCTAAGACATTCTTTCTTCATGAGAGATTACCTTAGGAGATGA 654 0.4388 MHDLRMIHTDLKPENILLVSPEYVKVPDYKSSSRSPSSYFKRVPKSSAIKVIDFGSTTYEREDQSYIVSTRHYRAPEVIIGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGRLDWPEGATSRESIKAVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPSERLTAREALRHSFFMRDYLRR 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272184g00008 217 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 212 - -
Stsc272184g00008 217 FunFam Serine/threonine-protein kinase AFC2 1 210 - -
Stsc272184g00008 217 Pfam Protein kinase domain 1 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272184g00008 217 SMART serkin_6 1 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272184g00008 217 Gene3D Transferase(Phosphotransferase) domain 1 1 210 - -
Stsc272184g00008 217 ProSiteProfiles Protein kinase domain profile. 1 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272184g00008 217 SUPERFAMILY Protein kinase-like (PK-like) 1 213 IPR011009 -
Stsc272184g00008 217 ProSitePatterns Serine/Threonine protein kinases active-site signature. 6 18 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272184g00008 Stsc-Chr272184 47396 50470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272184g00008 50 210 EF-hand Containing Proteins AT5G22840 30.899 3.20e-18 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Stsc272184g00008 Pkinase 1.9e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272184g00008 K08287 - gmx:100804452 426.787