Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272182g00007 ATGACTCGCACGCTAAGAATCCTCCAATCCGCCACCGCCAACAACGCCACCACCACCGCCATAGCTGCTGCCGTGCCACCGGCCGAGGCAGCCTCAGTCGAGTCCGACTTCGTCGTCATCCTAGCTGCGCTGCTCTGCGCACTCATCTGCGTCGTTGGCCTCATCGCCGTCGCAAGATGCGCCTGGCTCCGCCGCGTCCCCGTCGCAGGCACCGGATCATCGCCACATCAGGCACTCGCAAACCGTGGACTCAAGAAGAAGGTACTCAACTCGCTACCTAAGTTTACTTATGCCGAAGGCGACGGCAACGGTGCCGGTGCCGGTGATGACTCCGGCGTCAGGAGGAAGTGGAAAGCCACATCGGAATGCTCAATTTGTCTAACGGAATTCGCCGCCGGCGACGAGGTCCGGGTGCTTCCACAGTGCGGCCACGGATTCCACGTGGCATGTATTGACACGTGGCTTGGATCACACTCATCCTGCCCTTCGTGCCGCGCTGTCCTGGCTGTGGGGAGATGCCAGAAATGCGGGCAGTTCCCGGCTGTTCCAAACGGCACCACCGTGGTAGCAATTGCCGTAGAAACAGACTCAAAGTCAGTCGACGGCAATGCAAACGGTGGCGCCGCAAGTAATAGCCGGCATACTAGCAATGATTTCTTGCCATAA 666 0.5961 MTRTLRILQSATANNATTTAIAAAVPPAEAASVESDFVVILAALLCALICVVGLIAVARCAWLRRVPVAGTGSSPHQALANRGLKKKVLNSLPKFTYAEGDGNGAGAGDDSGVRRKWKATSECSICLTEFAAGDEVRVLPQCGHGFHVACIDTWLGSHSSCPSCRAVLAVGRCQKCGQFPAVPNGTTVVAIAVETDSKSVDGNANGGAASNSRHTSNDFLP 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272182g00007 221 CDD RING-H2_EL5-like 122 165 - -
Stsc272182g00007 221 SMART FANCL_C_2 119 173 - -
Stsc272182g00007 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 170 IPR013083 -
Stsc272182g00007 221 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 27 177 - -
Stsc272182g00007 221 MobiDBLite consensus disorder prediction 200 221 - -
Stsc272182g00007 221 SUPERFAMILY RING/U-box 122 169 - -
Stsc272182g00007 221 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Stsc272182g00007 221 Pfam Ring finger domain 122 165 IPR001841 -
Stsc272182g00007 221 SMART ring_2 123 164 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272182g00007 Stsc-Chr272182 36556 37221 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272182g00007 1 176 C3H Transcription Factor Family AT1G76410 57.222 1.37e-59 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272182g00007 - - pcin:129322223 242.662