Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272181g00006 ATGGCACCACTTAATATTCATTTGAAAGATGTAGTGTTTGTCACACCATCTAAGCCCACTCCTTTCTCTATTCTTTCTCTATCAACACTTGACAACATACCTGACCACAATAGCCTATGTCAAACCATTCATGTTTACAAATCATCACCACAAAATCATGGTGATTACCCAAATGACCAAATTGACCCTAACCCTATTAATGTAATCAAAGAAGCACTCTCTAAGGCATTGTTCTATTACTACCCTCTTGCCGGTAGGCTAGTGAAACATGTTGATGGGAAGTTTAGGGTTCATTGCAATCCCAACATTGGGGCTCCATTTGTGGAGGCAATTGCTGATTGCAATCTCTCTTCTCTTGATTACCTTGATTGTAGGGATTATGAAATTGCAAAGCTCTTTGCCTTTGATCTTCCTTCACAAGATGAAGAAAGTATTAAACAATACCCTCTAGGGTTCAAGGTGACAAAATTCTTATGCGGCGGATTCGTCATTGGCATGGCGGTTTCACATGTCATCATTGATGGATGTGGAGCATCTCAATTCTTAAGAGGCATTGTTGAATTAGCAAGCGGTAGAAATGAGCCTTCGGTGAAGCCTGTTTGGGAAAGAGAAAGGCTAATTGGGTCATTTACAAACACACCATTGCCGAGTCCCATGGATGGTCCTTCGGCCGCGAGTTCACCATATCTTCCTTCCAAGACACTTGTGCATGAATGTTTTAAGGTGGATGATGAGAGCATAAAGAGACTCAAGATGAGGTTGATCCAAGAATTCAACAACAATGTTGTTGGAACCACAAAAGAAAACATGATCATCACAAGTTTTGAATCGCTTTCGGCTTATGTTTGGAGGGCAAGAGCTAGAGCCCTAAAACTAAGCTACCATGGGAAAACAATGCTTAGTGTGATAGTGGGAATTAGAAGGCATTTGCTTGATCCTCCTTTGCCAGAAGGGTACTATGGGAATGCAATTGTGGATGCAAATGTTGTCTTGAGTGTGAAGGAACTGAATGAGAAGCCACTCTCACAAGTTGTGAAGCACATCAAAGAGAGCAAGAAGGTTGCTTTTACAAAGGATTATATTAGGGATTCAATTAACACCTTTGAGTCAACGGTTGAGGATTTTGATGTGGAAGGTAGTGGTGCATTCATGAGTTTGACTGATTGGAAGCATTTAGGGTTCTTGGAAAAATTGGATTTTAGAGGGAATGTGTTGGTGAATGCATTGCCTTCTCCATGCAACATGTTTGGGTCAGTTGGTTTGTGCATTTTTGCACCACTTAGTAACATTGATTCATCAATGAAAGGAGGAGTTAGGGTTTTTGTGTCACTCCCCAATGATGCCATGCCCAAGTTTAGGGAGGAGATGGAAGCACTTAGGCTTATTAATTAA 1392 0.4102 MAPLNIHLKDVVFVTPSKPTPFSILSLSTLDNIPDHNSLCQTIHVYKSSPQNHGDYPNDQIDPNPINVIKEALSKALFYYYPLAGRLVKHVDGKFRVHCNPNIGAPFVEAIADCNLSSLDYLDCRDYEIAKLFAFDLPSQDEESIKQYPLGFKVTKFLCGGFVIGMAVSHVIIDGCGASQFLRGIVELASGRNEPSVKPVWERERLIGSFTNTPLPSPMDGPSAASSPYLPSKTLVHECFKVDDESIKRLKMRLIQEFNNNVVGTTKENMIITSFESLSAYVWRARARALKLSYHGKTMLSVIVGIRRHLLDPPLPEGYYGNAIVDANVVLSVKELNEKPLSQVVKHIKESKKVAFTKDYIRDSINTFESTVEDFDVEGSGAFMSLTDWKHLGFLEKLDFRGNVLVNALPSPCNMFGSVGLCIFAPLSNIDSSMKGGVRVFVSLPNDAMPKFREEMEALRLIN 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272181g00006 463 PANTHER ACYL TRANSFERASE 4 8 457 - -
Stsc272181g00006 463 Pfam Transferase family 12 458 - -
Stsc272181g00006 463 Gene3D - 2 214 IPR023213 -
Stsc272181g00006 463 Gene3D - 220 456 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272181g00006 Stsc-Chr272181 42493 43884 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272181g00006 4 369 Monolignol Biosynthesis Gene Families AT5G48930 28.421 6.26e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272181g00006 K20240 - gmx:100783730 496.893