Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272181g00004 ATGGCATATGATCAAATTACCTCCTTCAAGATCCAAAACAAAGATGTTGAATATGTGAAGCCATCAAAACCTACTCCTTCCACTACACTTTCTCTATCCACAATTGATAATAGGCCTGAATTCCTTTACCTAAGCCAAGCCATTCGTGTATACCAATCACAAAATGAAAATTCCAAAAATGACCCTGCAATTGTGATCAAAGAAGCACTATCAAAGGCTTTGGTTTATTACTACCCTCTAGCTGGCAAGCTAGTGAAGCCTCATCATAACAATGGGAAGGTAACTATCAATTGCAATGAAGATGGTGTTCCATTTGTAGAGGCAATTGCAAATTGTGACCTTTCTTCACTCAATTATCTTGATTTGAGTGACATTGGAATTGCAAAAAACTTTGTGTATGATCCACCTTCTCTTCAAGATGAAAATGGTAACCAACTAATATACCCTATGGTGGTGAAGGTAACTATGTTTCAATGTGGAGGATTCACATTAGGGTTAGGAGAACCTCATGCTATTGCTGATGGAAGTGGCTCTATTAAGATCTTTCAAGCCGTAGCTGAATTCGCGAGCGGGCGAACTGAGCCTTCGGTGAAGCCTGTGTGGGAAAGGGAAAGGCTAAATGGGTCAATAACCAAGACGCCCATGCCGAGTCCCATCGATGAAGCCTCAGCTGCCGGTTCACCATATCTACCCTCTAAAACCCTAGTCCATGAATGTTTTAAGGTGGATGGTGAAAGCATAAAGAGACTCAAGTTGAATTTGACAAAGGAGATTCTTGACAATAATGTTCAAGTTGCAAATGATGAATTGAATTTCACAAATTTTGAGTCTCTTGCTGCTTATGTTTGGAGGGCAAGAACTAGGGCATTGAAATTGAGATATCATGGTAAAACTATGCTAAAATTTGCGGTAGGAATAAGAAGGCATTTAGATCCTCCTTTGCCTGAAGGGTATTATGGTAATACCATTGTAGATGCTGATGTTGTTTTGCCAGTTAAAGAAGTCAATGAAAAACCACTCTCACATGTGGTGAAGATTATTAAAGAGTTTAAGAAGGTTGCTTTCACAAAAGAATTTATCAACAACTCAATTGATACTTTGGAGACAAGAGTGGAGGAGTTTGATTTTGATGGGAATGGTTCATGCATGGCTTTGGCTGAGTGGAAACATTTAGGGTTCTTGGCAAACATGGATTTTGGATGGAAGGAGCCTGTGAATTTGATACCTGCCCCATGTAACATGTTTGGGAAAGTGAGTATTTGTATTTTCTTTCCTCCTAGTGACTTGGATACTTCGATGAGGGGAGGTGTTAAGATTTATGTCTCACTCCCCATTGATGCCATGCCCAAGTTTAGGGAAGAGATGAAAACTCTTACAATCATTAATTAA 1389 0.3945 MAYDQITSFKIQNKDVEYVKPSKPTPSTTLSLSTIDNRPEFLYLSQAIRVYQSQNENSKNDPAIVIKEALSKALVYYYPLAGKLVKPHHNNGKVTINCNEDGVPFVEAIANCDLSSLNYLDLSDIGIAKNFVYDPPSLQDENGNQLIYPMVVKVTMFQCGGFTLGLGEPHAIADGSGSIKIFQAVAEFASGRTEPSVKPVWERERLNGSITKTPMPSPIDEASAAGSPYLPSKTLVHECFKVDGESIKRLKLNLTKEILDNNVQVANDELNFTNFESLAAYVWRARTRALKLRYHGKTMLKFAVGIRRHLDPPLPEGYYGNTIVDADVVLPVKEVNEKPLSHVVKIIKEFKKVAFTKEFINNSIDTLETRVEEFDFDGNGSCMALAEWKHLGFLANMDFGWKEPVNLIPAPCNMFGKVSICIFFPPSDLDTSMRGGVKIYVSLPIDAMPKFREEMKTLTIIN 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272181g00004 462 PANTHER ACYL TRANSFERASE 4 9 457 - -
Stsc272181g00004 462 Gene3D - 5 216 IPR023213 -
Stsc272181g00004 462 Gene3D - 230 455 IPR023213 -
Stsc272181g00004 462 Pfam Transferase family 10 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272181g00004 Stsc-Chr272181 23525 24913 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272181g00004 10 410 Monolignol Biosynthesis Gene Families AT5G48930 27.924 1.21e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272181g00004 K20240 - gmx:100783730 474.552