Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272181g00003 ATGGAAAATAAAGAAGAACTTCTTAAGCTTAACATTCAATATGTTGTACTTGTAAAACCATCAAAACCCACTCCTTCATCTGTTCTTTCTCTATCTACAATTGACAACAGACCTGAGCTTAATACACTATGCCAAACCATTCACATATTTCAGCCACCAAATAACATCACGCAAAAAGATCTTGTTCTTAGGATTAAAGAAGCACTCTCAGAGGCATTGATCTATTACTATCCTCTTGCCGGAAGGCTAATAAAGCATGCTGATGGAAAACTTCGAATCCATTGCAATGCATATGGAGTTCCATATGTAGAAGCTATTGCAAATTGCGATCTTGCTTCCCTTCACTACCTTGATGGTAGTGACAGGGAGAATGCAAAACACTTAGCCTTTGATATTAATGATTTTGAAAATGGTTACCAATATCCTTTGGGGATAAAGGTGACCAAGTTTCTATGTGGCGGGTTCACAATGGGAATAGGCGCGTCACATGCTGTTTTTGATGGGAATGGAGGATCTCAATTCTTTAAAACCATAGCTGAACTCGTGAGCGGAAAAAGCGAGCCATCTGTGAAACCTGTGTGGGAGAGGGAAAGGCTAAATGGGTCAATTACTGAACATCCATTGCAAAGTCCCATGGATGAAGCCTCGGCTGCCGTTTCACCTTATTTGCCCACCACAACACTTGTGCATGAATGTTTCAAGGTGGATAGTAATACCATAAAAAGACTCAAAGTGAGTTTAACCAAGGAAATTAGTGATGATATTGACTCTTGGGAGGGTGAAAGCTTTACAAGTTTTGAAGCCCTTGGTGCTTATGTTTGGAGGTCAAGAACTAGAGCCTTGAAACTCAACTCTCATGGAAAAACTTCATTGGCTATTGTTGTTGGGATAAGAGGGAAGCACTCATTGGTTCCTCCTTTGCCTGAAGGGTATTATGGGAATGCTTTTGTGGATCCAAAGGTTGTGCTAACAGTAAAGGAACTCAATGAAATGCCACTCTCACGTGTTGTGAAGATGATCAACGAGGCTAAGAAGCTTGGTTTGTCAAAGGAGTATATTAAGAATCATACTGACACAACAGAGACAAAGACAGAGCAGTTTGATTATCAAGGTATTGGTGCAGCTATGGTTTTGTCTAGTTGGTTTTATTTGGGCATGTTGGAAAACATGGATTTAGGATGGGCTAAGCCGGTTAACATGGTACCGGCACCATGCGACGTGTTTGGGACAGTTGGATTATGGATTTTCGCACCTCCTAGTGACTTGGATCCTTCAATGAATGGAGGAGTTAGAATCTTTGTTTCTCTACCAAGTGAGGCTATGCCCAAGTTCAAGGAAGAGATGGAAGCTCTCAAAATTTTTAAACCCTTCAGCTGA 1377 0.4096 MENKEELLKLNIQYVVLVKPSKPTPSSVLSLSTIDNRPELNTLCQTIHIFQPPNNITQKDLVLRIKEALSEALIYYYPLAGRLIKHADGKLRIHCNAYGVPYVEAIANCDLASLHYLDGSDRENAKHLAFDINDFENGYQYPLGIKVTKFLCGGFTMGIGASHAVFDGNGGSQFFKTIAELVSGKSEPSVKPVWERERLNGSITEHPLQSPMDEASAAVSPYLPTTTLVHECFKVDSNTIKRLKVSLTKEISDDIDSWEGESFTSFEALGAYVWRSRTRALKLNSHGKTSLAIVVGIRGKHSLVPPLPEGYYGNAFVDPKVVLTVKELNEMPLSRVVKMINEAKKLGLSKEYIKNHTDTTETKTEQFDYQGIGAAMVLSSWFYLGMLENMDLGWAKPVNMVPAPCDVFGTVGLWIFAPPSDLDPSMNGGVRIFVSLPSEAMPKFKEEMEALKIFKPFS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272181g00003 458 Gene3D - 7 212 IPR023213 -
Stsc272181g00003 458 Gene3D - 213 448 IPR023213 -
Stsc272181g00003 458 Pfam Transferase family 12 450 - -
Stsc272181g00003 458 PANTHER ACYL TRANSFERASE 4 12 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272181g00003 Stsc-Chr272181 17720 19096 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272181g00003 8 446 Monolignol Biosynthesis Gene Families AT5G48930 25.974 6.94e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272181g00003 K20240 - gmx:100801843 506.138