Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272181g00001 ATGGCAAATAAAAGAGAAGAACTCCTTAAGGTTAACATGCAAGATATTGTACTTGTGAAACCATCAAAACCCACTCCTTCATCCATTGTTTCTCTATCCACAATTGACAATAGACCTGAACTATGTATTAATAACCTATGCCAAACAATTCACATATTCCAGTCACCAAATAACATTACCCAAAAAGATCCTGCACTTGTGATCAAAGAAGCACTGTCAGAGGCATTGTTCTATTACTACCCTCTTGCTGGGAGGTTGGTAAAGCATGCTGATGGAAAACTTGGAATCCATTGCAATGCATACGGAGTTCCATTTGTGGAAGCCGCTGCGAATTGCAAGCTTTCGTCCCTTCACTACCTTGACGGTAGTGACAGGGAAAATGCAAAATACTTTGCCGTTGATGTTCCTCCTAAGGAAAAAGATCATGAAAATGGTAACCAATACCCCTTGATGATAAAGGTGACAAAGTTTCTCTGTGGCGGGTTCACAATTGGACTATGCACATCACATGCTGTTTTTGATGGAAATGGAGCATCTCAATTCTTTCAAGCCTTGGCTGAATTCGCAAGCGGAAAAAGCGAGCCATCTGTGAAACCTGTGTGGGAGAGGGAAAGGCTAAATGGGTCAATTACTGAACATCCATTGCAAAGTCCTTTGGAAAACGTCTTAGACGCGGTTTCACCTTATTCATCGACCACAGCACTTGTGCATGAATGTTTTAAGGTGGATATCGAGAGCATTAAAAGACTCAAACTGAGTTTGAAGAACCAAGTTAGTGAGGGTGAAAGCTTTACAAGTTTTGAAGCCCTTGGTGCTTATGTTTGGAGGTCAAGAACTAGAGCCTTGAAACTCAACTCTCATGGAAAAACTACGTTGGCTATTATGGTAGGGTTAAGGAAGAATCACTCGTTCATTCCTCCTGTGCCTGAAGGGTATTATGGGAATGCTTTTGTGGATCCAAAGGTTGTGCTAACTGTAAAGGAACTCAATGAAAAGCCACTCTCACATGTTGTGAAGATGATTAAGGAGGCTAAGAAGCTTGGTTTCTCAAAGGAGTACATTAGGAATGTTATTGACACATTGGAGACAAAGAAAGAAGATCCCTTTTATTATGAAGGTGTTGGTGCATCTATGGTTTTGACTAGTTGGTTGCATTTGGGCATGCTGGAAAACATGGATTTAGGATGGGCTAAGGTAGTGAACATGGTACCGGCACCATGCAACACGTTTGGGACAGCTGGAATGTGTGTTTTCTCAGATCCTAGTGACTTGGATCCTTCAATGAAAGGAGGTGTTAGGATCTTTGTTTCTCTACCTAGTGATGCTATGCCCAAGTTCAAGGAGGAGATGGAAGCTCTCAAGCTTGCTT 1369 0.4178 MANKREELLKVNMQDIVLVKPSKPTPSSIVSLSTIDNRPELCINNLCQTIHIFQSPNNITQKDPALVIKEALSEALFYYYPLAGRLVKHADGKLGIHCNAYGVPFVEAAANCKLSSLHYLDGSDRENAKYFAVDVPPKEKDHENGNQYPLMIKVTKFLCGGFTIGLCTSHAVFDGNGASQFFQALAEFASGKSEPSVKPVWERERLNGSITEHPLQSPLENVLDAVSPYSSTTALVHECFKVDIESIKRLKLSLKNQVSEGESFTSFEALGAYVWRSRTRALKLNSHGKTTLAIMVGLRKNHSFIPPVPEGYYGNAFVDPKVVLTVKELNEKPLSHVVKMIKEAKKLGFSKEYIRNVIDTLETKKEDPFYYEGVGASMVLTSWLHLGMLENMDLGWAKVVNMVPAPCNTFGTAGMCVFSDPSDLDPSMKGGVRIFVSLPSDAMPKFKEEMEALKLA 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272181g00001 456 Gene3D - 6 217 IPR023213 -
Stsc272181g00001 456 PANTHER ACYL TRANSFERASE 4 9 452 - -
Stsc272181g00001 456 Gene3D - 224 450 IPR023213 -
Stsc272181g00001 456 Pfam Transferase family 10 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272181g00001 Stsc-Chr272181 3982 5350 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272181g00001 9 448 Monolignol Biosynthesis Gene Families AT5G48930 26.419 4.59e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272181g00001 K20240 - gmx:100801843 511.146