Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272179g00011 ATGGGCGCAAATTCGTTGCCATCCGAGTCGACTCATGATCTTGACGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCACTTTCCGAGCAACAGGTCAGAGTTTTATGTGAGAAGGCTAAGGAGATATTAATGGATGAAAGTAATGTCCAGCCTGTGAAAAGCCCTGTGACAATTTGTGGCGATATTCATGGGCAGTTTCATGATCTTGCTGAACTATTTCGGATTGGAGGGAAGTGTCCAGATACGAATTACTTGTTTATGGGTGATTATGTGGACCGAGGATATTATTCAGTTGAAACTGTAACGCTGCTTGTTGCACTGAAAGTGCGGTATCCTCAACGAATAACCATTCTTAGGGGAAACCATGAAAGCCGTCAGATCACTCAAGTATATGGATTTTATGATGAGTGCCTTAGAAAGTATGGTAGTGCTAATGTGTGGAAGATATTTACAGACCTTTTTGATTTTTTTCCACTGACTGCATTGGTGGAGTCTGAAATATTCTGTCTGCATGGTGGACTTTCACCTTCAATTGAGACCCTTGATAACATAAGGAGCTTTGATCGTGTTCAAGAGGTACCTCATGAAGGGGCCATGTGTGATCTTTTGTGGTCTGATCCAGATGACAGGTGTGGCTGGGGAATTTCTCCACGAGGTGCTGGATATACTTTTGGCCAGGATATATCTGAACAATTTAATCACACAAACAGTCTTAAGTTGATTGCTAGAGCTCATCAGCTGGTTATGGATGGCTTTAACTGGGCTCATGAACAAAAGGTGGTTACAATTTTCAGTGCACCCAACTACTGTTACCGATGCGGGAACATGGCTTCCATATTGGAGGTTGATGATTGCAAGGGCCACACATTTATCCAGTTCGAACCTGCTCCAAGGAGAGGAGAACCTGATGTTACCCGTAGAACGCCTGATTACTTCCTATGA 942 0.4374 MGANSLPSESTHDLDEQISQLMQCKPLSEQQVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRSFDRVQEVPHEGAMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272179g00011 313 Pfam Calcineurin-like phosphoesterase 55 246 IPR004843 GO:0016787
Stsc272179g00011 313 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Stsc272179g00011 313 PRINTS Serine/threonine phosphatase family signature 181 208 IPR006186 GO:0016787
Stsc272179g00011 313 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Stsc272179g00011 313 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Stsc272179g00011 313 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Stsc272179g00011 313 PRINTS Serine/threonine phosphatase family signature 152 178 IPR006186 GO:0016787
Stsc272179g00011 313 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Stsc272179g00011 313 SUPERFAMILY Metallo-dependent phosphatases 9 298 IPR029052 -
Stsc272179g00011 313 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Stsc272179g00011 313 FunFam Serine/threonine-protein phosphatase 7 313 - -
Stsc272179g00011 313 SMART pp2a_7 27 297 IPR006186 GO:0016787
Stsc272179g00011 313 Gene3D - 7 313 IPR029052 -
Stsc272179g00011 313 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 12 313 IPR047129 GO:0004722
Stsc272179g00011 313 CDD MPP_PP2A_PP4_PP6 13 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272179g00011 Stsc-Chr272179 42978 47397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272179g00011 19 243 Calmodulin-binding Proteins AT5G63870 34.457 3.73e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272179g00011 K04382 - thj:104821037 639.417