Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272178g00001 ATGGAAATGGAAACGGAAAAGGAAAACTCAAACTCCAACTCCGAAAATACCTTACTTCCTTCCAAATACGTTCGCTACAACATTCTTGGAAACTTGTTCGACGTTTATTCTCACTACGTTCCTCCCATCCAACCCGTTGGCCGTGGCGCTTACGGCGTCGTTTGTTGCGCGACGAATTCGGAGACCAAAGAAGGTGTTGCCATCAAGAAGATCGGGAATGCATTTGATAACAGGATCGATGCGAAGAGGACTCTGCGGGAAATCAAGCTCCTCTGTCACATGGATCATGATAACGTGATTAAGATTAAGGATATAATTAGGCCAGCGGAGAGGGAAAAGTTTAATGATGTGTACATAGTTTATGAGCTGATGGACACTGATCTCCATCAGATTATTCAGTCTAACCAGCCTCTCACTGATGATCACTGCCAGCTCTTGAGAGGATTAAAGTATGTACACTCTGCCAATGTTTTGCATCGAGATCTAAAGCCAAGCAATTTACTTCTCAATGCAAATTGTGATCTCAAAATATGCGACTTTGGGCTTGCCAGAACAACATCTGAGACAGACTTTATGACAGAATATGTTGTCACTCGTTGGTACAGAGCCCCTGAATTGCTATTGAACTGTTCAGAATATACTGCAGCTATTGATATCTGGTCGGTTGGATGCATTTTGATGGAAATAATTAGAAGGGAACCTTTGTTTCCTGGTAAAGATTATGTTCAGCAGTTGGCACTTATAACTGAGTTACTAGGTTCACCAGATGAATCGGATCTTGGATTCCTCAGAAGTGAGAATGCAAAGAAATATGTCAAGCAGCTCCCACATGTAGAAAAGCAGCCATTTGTGCAGAGGTTTCCTGATGTTTCCCCATTGGCGATTGATCTTGCTGAGAAAATGTTGGTTTTTGATCCCTCAAAACGCATAACTGTTGAGGAAGCACTGAATCACCCATATTTGTCAAGCCTTCATGAGATAAACGAGGAGCCCACTTGCCCAAGTCCATTCATCTTTGATTTTGAACAGACAAGTCTGAATGAAGAAGATATAAAGGAGCTCATATGGCAAGAGTCTCTGCACTTCAGCCAGGATCAGATGCTCGAATAA 1110 0.4234 MEMETEKENSNSNSENTLLPSKYVRYNILGNLFDVYSHYVPPIQPVGRGAYGVVCCATNSETKEGVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHDNVIKIKDIIRPAEREKFNDVYIVYELMDTDLHQIIQSNQPLTDDHCQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILMEIIRREPLFPGKDYVQQLALITELLGSPDESDLGFLRSENAKKYVKQLPHVEKQPFVQRFPDVSPLAIDLAEKMLVFDPSKRITVEEALNHPYLSSLHEINEEPTCPSPFIFDFEQTSLNEEDIKELIWQESLHFSQDQMLE 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272178g00001 369 SUPERFAMILY Protein kinase-like (PK-like) 43 327 IPR011009 -
Stsc272178g00001 369 ProSitePatterns MAP kinase signature. 75 173 IPR003527 GO:0004707|GO:0005524|GO:0006468
Stsc272178g00001 369 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 39 322 - -
Stsc272178g00001 369 ProSiteProfiles Protein kinase domain profile. 40 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272178g00001 369 FunFam Mitogen-activated protein kinase 124 348 - -
Stsc272178g00001 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Stsc272178g00001 369 Pfam Protein kinase domain 44 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272178g00001 369 CDD STKc_TEY_MAPK 33 363 - -
Stsc272178g00001 369 FunFam Mitogen-activated protein kinase 25 134 - -
Stsc272178g00001 369 Gene3D Transferase(Phosphotransferase) domain 1 124 348 - -
Stsc272178g00001 369 Gene3D Phosphorylase Kinase; domain 1 23 358 - -
Stsc272178g00001 369 SMART serkin_6 40 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272178g00001 369 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272178g00001 Stsc-Chr272178 5832 8791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272178g00001 21 362 MAP Kinase Gene Family AT1G07880 79.539 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Stsc272178g00001 Pkinase 1.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272178g00001 K04371 - gmx:100802929 659.833