LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272178g00001	ATGGAAATGGAAACGGAAAAGGAAAACTCAAACTCCAACTCCGAAAATACCTTACTTCCTTCCAAATACGTTCGCTACAACATTCTTGGAAACTTGTTCGACGTTTATTCTCACTACGTTCCTCCCATCCAACCCGTTGGCCGTGGCGCTTACGGCGTCGTTTGTTGCGCGACGAATTCGGAGACCAAAGAAGGTGTTGCCATCAAGAAGATCGGGAATGCATTTGATAACAGGATCGATGCGAAGAGGACTCTGCGGGAAATCAAGCTCCTCTGTCACATGGATCATGATAACGTGATTAAGATTAAGGATATAATTAGGCCAGCGGAGAGGGAAAAGTTTAATGATGTGTACATAGTTTATGAGCTGATGGACACTGATCTCCATCAGATTATTCAGTCTAACCAGCCTCTCACTGATGATCACTGCCAGCTCTTGAGAGGATTAAAGTATGTACACTCTGCCAATGTTTTGCATCGAGATCTAAAGCCAAGCAATTTACTTCTCAATGCAAATTGTGATCTCAAAATATGCGACTTTGGGCTTGCCAGAACAACATCTGAGACAGACTTTATGACAGAATATGTTGTCACTCGTTGGTACAGAGCCCCTGAATTGCTATTGAACTGTTCAGAATATACTGCAGCTATTGATATCTGGTCGGTTGGATGCATTTTGATGGAAATAATTAGAAGGGAACCTTTGTTTCCTGGTAAAGATTATGTTCAGCAGTTGGCACTTATAACTGAGTTACTAGGTTCACCAGATGAATCGGATCTTGGATTCCTCAGAAGTGAGAATGCAAAGAAATATGTCAAGCAGCTCCCACATGTAGAAAAGCAGCCATTTGTGCAGAGGTTTCCTGATGTTTCCCCATTGGCGATTGATCTTGCTGAGAAAATGTTGGTTTTTGATCCCTCAAAACGCATAACTGTTGAGGAAGCACTGAATCACCCATATTTGTCAAGCCTTCATGAGATAAACGAGGAGCCCACTTGCCCAAGTCCATTCATCTTTGATTTTGAACAGACAAGTCTGAATGAAGAAGATATAAAGGAGCTCATATGGCAAGAGTCTCTGCACTTCAGCCAGGATCAGATGCTCGAATAA	1110	0.4234	MEMETEKENSNSNSENTLLPSKYVRYNILGNLFDVYSHYVPPIQPVGRGAYGVVCCATNSETKEGVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHDNVIKIKDIIRPAEREKFNDVYIVYELMDTDLHQIIQSNQPLTDDHCQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILMEIIRREPLFPGKDYVQQLALITELLGSPDESDLGFLRSENAKKYVKQLPHVEKQPFVQRFPDVSPLAIDLAEKMLVFDPSKRITVEEALNHPYLSSLHEINEEPTCPSPFIFDFEQTSLNEEDIKELIWQESLHFSQDQMLE	369

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc272178g00001	369	SUPERFAMILY	Protein kinase-like (PK-like)	43	327	IPR011009	-
Stsc272178g00001	369	ProSitePatterns	MAP kinase signature.	75	173	IPR003527	GO:0004707\|GO:0005524\|GO:0006468
Stsc272178g00001	369	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	39	322	-	-
Stsc272178g00001	369	ProSiteProfiles	Protein kinase domain profile.	40	321	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Stsc272178g00001	369	FunFam	Mitogen-activated protein kinase	124	348	-	-
Stsc272178g00001	369	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	157	169	IPR008271	GO:0004672\|GO:0006468
Stsc272178g00001	369	Pfam	Protein kinase domain	44	321	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Stsc272178g00001	369	CDD	STKc_TEY_MAPK	33	363	-	-
Stsc272178g00001	369	FunFam	Mitogen-activated protein kinase	25	134	-	-
Stsc272178g00001	369	Gene3D	Transferase(Phosphotransferase) domain 1	124	348	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272178g00001	Stsc-Chr272178	5832	8791	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272178g00001	21	362	MAP Kinase Gene Family	AT1G07880	79.539	0.0	596

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_MAPK	Stsc272178g00001		Pkinase	1.3e-66	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272178g00001	K04371		-	gmx:100802929	659.833

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