Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272176g00005 ATGGGGTGTTCATTTTCCGGTTTGAACGCACTTTACGATTCCGTTAACGGAGGCGGAGATGTTTGGATCAACGAGAACCGATTCCGTATCGTTAGGCAGCTCGGTGAAGGTGGCAACGCCTATATCTTCCTCGTCAAGGACATTCCCGCCGACAGCCCCTCCGGCGGTTTCTCCGCCAAGCTCAAACAATCCTCTCATATCTCCGAGGACGGAACATATGCTATGAAAAAGGTCCTCATCAGGAGCAATGAGCAGCTGGAGTTGGTCAGGGAGGACATCCGTGTTTCTTCGCTGTTCAACCACCCAAATCTGCTCCCTCTTCTCGATCATGCAATCATTTCTGTCAAGCCTACTCCACAAAGATCTTGGAACCACGAGGCGTATTTGTTATTTCCAGTTCATTTGGATGGAACACTGCTAGATAATACCAAGACAATGCAAACCAGGAAGGAATCCTTTCCTACCGCTGATGTTCTTCAAATCTTTCGACAGCTTTGTGCAGGACTCAAGCATATGCACAGTTTAGATACTCCATATGCTCATAATGATGTCAAACCTGGTAATGTTCTCATAACACACAGAAAAGGAAAACCACCTCTTGCCATACTTATGGATTTTGGCAGTGCTCGTCCTGCCAGGAAGCACATTGGTAACAGATCAGAGTCACTCCAATTGCAGGAATGGGCAGCTGAACATTGCTCTGCCCCTTTCCGAGCTCCGGAGCTGTGGGAATGCCCAATTCCAGCTGATATAGATGAGAGGACTGACGTGTGGTCACTAGGATGTACATTATATGCAATAATTGAAAACTAA 813 0.4699 MGCSFSGLNALYDSVNGGGDVWINENRFRIVRQLGEGGNAYIFLVKDIPADSPSGGFSAKLKQSSHISEDGTYAMKKVLIRSNEQLELVREDIRVSSLFNHPNLLPLLDHAIISVKPTPQRSWNHEAYLLFPVHLDGTLLDNTKTMQTRKESFPTADVLQIFRQLCAGLKHMHSLDTPYAHNDVKPGNVLITHRKGKPPLAILMDFGSARPARKHIGNRSESLQLQEWAAEHCSAPFRAPELWECPIPADIDERTDVWSLGCTLYAIIEN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272176g00005 270 Gene3D Transferase(Phosphotransferase) domain 1 135 270 - -
Stsc272176g00005 270 SMART serkin_6 28 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272176g00005 270 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Stsc272176g00005 270 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 3 268 - -
Stsc272176g00005 270 SUPERFAMILY Protein kinase-like (PK-like) 21 268 IPR011009 -
Stsc272176g00005 270 Gene3D Phosphorylase Kinase; domain 1 13 132 - -
Stsc272176g00005 270 Pfam Protein kinase domain 58 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272176g00005 270 ProSiteProfiles Protein kinase domain profile. 28 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272176g00005 Stsc-Chr272176 28347 32408 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272176g00005 29 268 Receptor kinase-like Gene Family AT2G23450 23.200 1.03e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Stsc272176g00005 Pkinase 1.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272176g00005 K08856 - gmx:100803659 474.167