Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272176g00004 ATGGGGTGTTCATTTTCCGGTTTGAACGCACTTTACGATTCCGTTAACGGAGGCGGAGATGTTTGGATCAACGAGAACCGATTCCGTATCGTTAGGCAGCTCGGTGAAGGTGGCAACGCCTATATCTTCCTCGTCAAGGACATTCCCGCCGACAGCCCCTCCGGCGGTTTCTCCGCCAAGCTCAAACAATCCTCTCATATCTCCGAGGACGGAACATATGCTATGAAAAAGGTCCTCATCAGGAGCAATGAGCAGCTGGAGTTGGTCAGGGAGGACATCCGTGTTTCTTCGCTGTTCAACCACCCAAATCTGCTCCCTCTTCTCGATCATGCAATCATTTCTGTCAAGCCTACTCCACAAAGATCTTGGAACCACGAGGCGTATTTGTTATTTCCAGTTCATTTGGATGGAACACTGCTAGATAATACCAAGACAATGCAAACCAGGAAGGAATCCTTTCCTACCGCTGATGTTCTTCAAATCTTTCGACAGCTTTGTGCAGGACTCAAGCATATGCACAGTTTAGATACTCCATATGCTCATAATGATGTCAAACCTGGTAATGTTCTCATAACACACAGAAAAGGAAAACCACCTCTTGCCATACTTATGGATTTTGGCAGTGCTCGTCCTGCCAGGAAGCACATTGGTAACAGATCAGAGTCACTCCAATTGCAGGAATGGGCAGCTGAACATTGCTCTGCCCCTTTCCGAGCTCCGGAGCTGTGGGAATGCCCAATTCCAGCTGATATAGATGAGAGGACTGACGTGTGGTCACTAGGATGTACATTATATGCAATAATGTATGGGGTATCTCCATTTGAATATGCACTTGATGAGCCTGAAGGAGACCTCCGATCAGCCGTTTTAAATGCTAAAATCAAATGGCCAACTGAACGTAAGTCTCAATATCCAGACGCCCTTCATCAGTTTGTATCATGGATGCTTCAACCCCAGATTGCTGTGCGGCCCCGGATAGATGATATTGATATCCATGTTGATAAGTTGATTGCAAAGTTCTCTGGTTGA 1029 0.4645 MGCSFSGLNALYDSVNGGGDVWINENRFRIVRQLGEGGNAYIFLVKDIPADSPSGGFSAKLKQSSHISEDGTYAMKKVLIRSNEQLELVREDIRVSSLFNHPNLLPLLDHAIISVKPTPQRSWNHEAYLLFPVHLDGTLLDNTKTMQTRKESFPTADVLQIFRQLCAGLKHMHSLDTPYAHNDVKPGNVLITHRKGKPPLAILMDFGSARPARKHIGNRSESLQLQEWAAEHCSAPFRAPELWECPIPADIDERTDVWSLGCTLYAIMYGVSPFEYALDEPEGDLRSAVLNAKIKWPTERKSQYPDALHQFVSWMLQPQIAVRPRIDDIDIHVDKLIAKFSG 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272176g00004 342 SMART serkin_6 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272176g00004 342 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 3 340 - -
Stsc272176g00004 342 Pfam Protein kinase domain 58 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272176g00004 342 SUPERFAMILY Protein kinase-like (PK-like) 21 329 IPR011009 -
Stsc272176g00004 342 Gene3D Phosphorylase Kinase; domain 1 13 132 - -
Stsc272176g00004 342 ProSiteProfiles Protein kinase domain profile. 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272176g00004 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Stsc272176g00004 342 Gene3D Transferase(Phosphotransferase) domain 1 135 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272176g00004 Stsc-Chr272176 28347 32408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272176g00004 72 279 EF-hand Containing Proteins AT4G04710 24.645 4.79e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Stsc272176g00004 Pkinase 1.9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272176g00004 K08856 - gmx:100803659 582.793