Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272174g00005 ATGGGATCTGAGAATCAGGCTTCGATGGCTGATACTTCAAAAAACAGGTCATCTGGTAAAACAAATCAGGGGAAAGTCCCTAAGAGAATCCACAAGGCCGAAAGAGAGAAAATGAAGCGTGAACATTTGAATGAGCTCTTTCTTGATCTTGCCAATGTACTTGATCTAAATGAGCAGAATAACGGAAAGGCTTCGATATTAAACGAAACTGCTAGGCTGCTAAAGGACTTGCTCAGTCAGATTGAGTCCCTCAAGAAGGAGAACTCGTCTCTGTTGTCTGAATCTCGATATGTGACCATGGAGAAAAATGAGCTGAAGGAGGAGACTTCCGGTCTAGAAGCTCAAATCGAGAAACTTCAAGTCGAGATACAAGCGAGAGTAACCCAGTCTAAACCTGACCTGAATGCGCCTCTCCAAGTGGAAATTGAGCCGCCGGAGCAGGCAAATTTTACAGGGCAGAGTCTCCAATTCCCTCCAGTGGAACCCAACTTGCAGCAGGGACCTGCAGTTTTTGTTGTCCCCTTTCGTCCCGATTTCCAATCTGCTTTCTCAGCTCCCAACATGACGGAGGTCACTCCAACACCTTCATCTGGTGTTAGTAAACCGCATGCTCGGTATCCAACGGCAGCAGATTCATGGCCTTCATTGCTGCTTGGACAGCAACCAGCCTCAAGTTGA 678 0.469 MGSENQASMADTSKNRSSGKTNQGKVPKRIHKAEREKMKREHLNELFLDLANVLDLNEQNNGKASILNETARLLKDLLSQIESLKKENSSLLSESRYVTMEKNELKEETSGLEAQIEKLQVEIQARVTQSKPDLNAPLQVEIEPPEQANFTGQSLQFPPVEPNLQQGPAVFVVPFRPDFQSAFSAPNMTEVTPTPSSGVSKPHARYPTAADSWPSLLLGQQPASS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272174g00005 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 27 77 IPR011598 GO:0046983
Stsc272174g00005 225 MobiDBLite consensus disorder prediction 184 225 - -
Stsc272174g00005 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 25 91 IPR036638 GO:0046983
Stsc272174g00005 225 MobiDBLite consensus disorder prediction 1 32 - -
Stsc272174g00005 225 Coils Coil 102 122 - -
Stsc272174g00005 225 MobiDBLite consensus disorder prediction 184 201 - -
Stsc272174g00005 225 Gene3D - 24 100 IPR036638 GO:0046983
Stsc272174g00005 225 Coils Coil 67 94 - -
Stsc272174g00005 225 CDD bHLH_AtILR3_like 32 106 - -
Stsc272174g00005 225 PANTHER TRANSCRIPTION FACTOR BHLH47 4 224 - -
Stsc272174g00005 225 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272174g00005 Stsc-Chr272174 35667 38221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272174g00005 1 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 49.791 5.05e-62 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272174g00005 - - mtr:11438092 314.694