Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272174g00003 ATGGAGGGAGGTGATGATTTCCACCACCATCACCACCACCACCAACACCAGCAACACCACCACCACCGACAGAACTTCCCATTCCAACTTCTAGAGAAGAAAGAAGATCAAGAAGCAGCATCATGCTCAACCTCCTCCCCATACCCTTCCTTAGCAATCTCATCAGCCGCAGAACCATCCACATCAAATTCAAACCGATCCAATCCAAACAGCAACAACACCACAACCAACAACAACAACAACAATAACAACCAATTAGCCTTACAACAAGAACAGCAAATACAGCCTTCCGAACCTTCCGGAAAGAAGCCTCCTCCTAAGCGGACATCCACCAAGGACCGCCATACGAAAGTCGACGGTCGCGGCCGTCGCATCCGAATGCCGGCTCTCTGTGCAGCCAGGGTCTTCCAGCTGACCAGAGAGCTCGGCCACAAGTCCGATGGTGAGACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCAGCCGTGATCGCCGCCACCGGAACGGGAACAATCCCCGCAAACTTCACGTCGCTGAATATCTCCCTCCGAAGCAGCGGTTCCTCCATGTCCGTACCATCCCAGCTCCGATCCTCTTACTTCAACCCTAACTTCTCCCTCCAAAACCGGCGAACCTTGTTCCCCGGAATAACCCTCTCCTCCGACGCCACCACCACCGCCAGTAACAACAACAACAACAACAACACGACAACGCTCCTCAACTTCCAACAGCAACAGCAAACCCTAACCGCGAATATCTTCAAGCAAGAACTCAGAGAGAGCCACGGCGCTCCTTCTTCTTCTTCGACGTTGGATTTATCGGAAACAAGCGCGGAAGAAGGTTCGTTAGGGAGAAAGAGAAGACCGCCATCGGAACAACACGAGCTATCTCCTTCAGCACAGCACCAAATGGGAAGCTACCTTCTGCAATCAAGCGCAGGGGCGATTCCGGCGAGCCACGCAGCTCAGATTCCGGCGAACATATGGATGGTGGCGAATTCCCAAAATGCCCCTCAGGTAATGAGCGGTGACCCTATATGGACGTTTCNNNNNNNNNNTCAGGTTAGTAACAGTGGGTTGTACCGTGGAACCGTTTCCAGTGGTTTGCACTTTATGAACTTCCCTACACCCATGGCTTTGCTGCCCACTCAGCAATTAGCCTCTTCCGGTGGCGGAGGCAGTGTGAACGAAGGGCATTTGAATATGATCGCTGGGCTGGGCAGTTACCGGCCGGTGATCGGAGTTTCAGAGCCTTCTCAGGCGAGTGGGTCCCATCATCATCGAGATGGAAACGATGATCGGCACGATAGTAGCGGCCACCACTCGTGA 1326 0.5324 MEGGDDFHHHHHHHQHQQHHHHRQNFPFQLLEKKEDQEAASCSTSSPYPSLAISSAAEPSTSNSNRSNPNSNNTTTNNNNNNNNQLALQQEQQIQPSEPSGKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQNRRTLFPGITLSSDATTTASNNNNNNNTTTLLNFQQQQQTLTANIFKQELRESHGAPSSSSTLDLSETSAEEGSLGRKRRPPSEQHELSPSAQHQMGSYLLQSSAGAIPASHAAQIPANIWMVANSQNAPQVMSGDPIWTFXXXXQVSNSGLYRGTVSSGLHFMNFPTPMALLPTQQLASSGGGGSVNEGHLNMIAGLGSYRPVIGVSEPSQASGSHHHRDGNDDRHDSSGHHS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272174g00003 441 MobiDBLite consensus disorder prediction 221 276 - -
Stsc272174g00003 441 MobiDBLite consensus disorder prediction 221 303 - -
Stsc272174g00003 441 MobiDBLite consensus disorder prediction 412 441 - -
Stsc272174g00003 441 MobiDBLite consensus disorder prediction 25 39 - -
Stsc272174g00003 441 MobiDBLite consensus disorder prediction 278 292 - -
Stsc272174g00003 441 MobiDBLite consensus disorder prediction 421 441 - -
Stsc272174g00003 441 MobiDBLite consensus disorder prediction 105 124 - -
Stsc272174g00003 441 ProSiteProfiles TCP domain profile. 111 165 IPR017887 -
Stsc272174g00003 441 MobiDBLite consensus disorder prediction 1 125 - -
Stsc272174g00003 441 MobiDBLite consensus disorder prediction 40 98 - -
Stsc272174g00003 441 Pfam TCP family transcription factor 109 251 IPR017887 -
Stsc272174g00003 441 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 60 415 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272174g00003 Stsc-Chr272174 21516 23380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272174g00003 90 396 TCP Transcription Factor Family AT3G47620 45.161 4.72e-59 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Stsc272174g00003 TCP 9.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272174g00003 - - gmx:100809776 439.884