Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272173g00002 ATGGAAGAGGTCTTGAATTCCATTAGCCACGCTTGCGAATTAGCGAAGAAATTTGAATCGAAGTTATTACTACCAAACATGGCTTTTTCCTCTTCCTCCTCCTCCATCACCAATATACAACCTGAAATATTGGTTTCTTCCATTGATGAAGTTGTGAAGGCATTCATTAGTGCAAAGGAGAAGCTGTTGTTGACGGTGATGAATAATAATTTGATGGGAGCTGCTTCTTCTTCTTCTTTTGCACCATTGTTCATGCACGAAGCTCAACAAATGGGCGCAAGATCCTTTTCAATTATGATGCAAGAATGGATGAAATCTTCTACTACAAGCTATGCACACACAATGGATCAGGTTATGTTGCAAATGCAGCAGCATCATCATCAACATCACGAAGGACAACAAGGACTATTCGATGTGAGGGCTGCTTTGAGCGTCGGTGGTATGGATCCTCAGCAGTTAAGGAATGTTGAAGGATCATCTGTAGAGAAATCAATGAAAGGCTTTGAGGTAGAAGTATCACCTTCAAGGCCAAGGAAAAGGAAGAATGATGCGGAGAAGAGAATAGTTAACCTTCCAGCTCAACAACTTGGAAACACAGAAATGCCAATGGAAGATGGATTCACTTGGAGAAAATATGGTCAGAAAGAGATACTTGGCTCTAAGTATCAAAGGAGCTATTACAGGTGCACCCACCAGAAACAATATGGATGCCCAGCAAAGAAACAAGTACAGAAAATTGAAAACAATCCAAACATATTTGAAGTAACATACCTTGGTGATCACACATGCCATATGTCATCAACAGCACCATCATCATTTCCACAACAACTTCATCAACTTGATAACATTAACATCATGCCTCCATTTAATCCTCATCAAGGAGGAGCACCTACCACTTCCTCTTCATCTTCTTCAATGTGGATGCACTCAGTTAGCCTCACCCTCGGCGGCAGCAGCAACCGCGATTGTGCTGGACCGTCTACTTCGAAATACGGCGGTGGAGATTATCTGGTGGCTGATATGGCTGATGTTATGTTTAATTCTGGCAATAGCAGTGGGAATAGTATGGAATCTCTCTTCCCTTCCAATGATGATGATAATTGGGATCCAAATGAAAAGAAAAGTAGTTGA 1131 0.4147 MEEVLNSISHACELAKKFESKLLLPNMAFSSSSSSITNIQPEILVSSIDEVVKAFISAKEKLLLTVMNNNLMGAASSSSFAPLFMHEAQQMGARSFSIMMQEWMKSSTTSYAHTMDQVMLQMQQHHHQHHEGQQGLFDVRAALSVGGMDPQQLRNVEGSSVEKSMKGFEVEVSPSRPRKRKNDAEKRIVNLPAQQLGNTEMPMEDGFTWRKYGQKEILGSKYQRSYYRCTHQKQYGCPAKKQVQKIENNPNIFEVTYLGDHTCHMSSTAPSSFPQQLHQLDNINIMPPFNPHQGGAPTTSSSSSSMWMHSVSLTLGGSSNRDCAGPSTSKYGGGDYLVADMADVMFNSGNSSGNSMESLFPSNDDDNWDPNEKKSS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272173g00002 376 MobiDBLite consensus disorder prediction 348 365 - -
Stsc272173g00002 376 Pfam WRKY DNA -binding domain 204 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272173g00002 376 SUPERFAMILY WRKY DNA-binding domain 200 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272173g00002 376 ProSiteProfiles WRKY domain profile. 198 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272173g00002 376 MobiDBLite consensus disorder prediction 348 376 - -
Stsc272173g00002 376 Gene3D WRKY domain 182 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272173g00002 376 SMART WRKY_cls 203 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272173g00002 376 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 94 278 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272173g00002 Stsc-Chr272173 6892 11390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272173g00002 1 364 WRKY Transcription Factor Family AT2G40740 34.605 4.23e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc272173g00002 WRKY 7.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272173g00002 - - aip:107607129 485.723