Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272172g00004 ATGTCTCCTTCTTCTTCTTCTTCTTCTTGTCTCTCTCACTTGATCTCTGCAACTGCAAACCTCAGATCAATGCACAACATTCCAATGATTTCACACTCCATAGCCATATCCAAGTTTCCTCACCCATTTTCTTCTTCTTCTTCTTCTTTACCACTCAGTCTCAGCTTCACCATCAATGGAGGAGGAGGAGGAGGACCCTTCTTGTCATACCCATCACAAAAGTCACCTTCTTTCCTCATTTCATCTCCAAAGATTCAATCTTTGAGGCTTTTTGCTGCTGCTTCTGTTCCTGAAGCTAAGAGTGATGAACCTATCAAACCAGCTGGTTTAATTCAAACCCTTCAGCTTGGAGCCATGTTTGGAACTTGGTACCTCTTGAACATTTACTTCAACATCTACAACAAACAGGTTCTAAAAGTCTATCCATTTCCAGCAACAGTTACAGCATTTCAATTTGGCTTTGCTTCATTGATGATTAACTTGATCTGGAGTCTTAATCTGCATCCCAGACCAAACATAACTCGTTCACAGCTTGTAGCAATTCTTCCATTGGTTGTGGCTCATACAATGGGGAATCTTCTAACCAACATTAGTCTTGGCAAGGTTGCTGTATCTTTCACTCACACAATTAAAGCCATGGAGCCCTTTTTCACTGTTCTTCTTTCCTCCCTCTTCCTTGGTGAGATGCCGACTTTTGCGGTGGTTTCTTCTCTCGTACCGATAGTAGGAGGAGTGGCATTGGCATCAATGACTGAACTCTCCTTCAATTGGATTGGCTTTGCTACTGCTATGGCATCTAACCTTACTAACCAGTCGCGGAATGTTTTGAGTAAAAAACTCATGGTCAATGAAGAGGAAACTTTGGACAATATCAACCTCTACTCTTTGATAACTATCATTTCCTTTATCCTTTTGGTTCCATTTACTATATTCTTGGAGGGCTTCAAGTTTACTCCGTCGTACCTGCAATCCGCTGCATGCCAAGGATTGAATGTTAGAGAGCTATGTGTGAGATCAGTTTTGGCGGGGATCTGCTTCCATGCATATCAGCAGGTATCTTATGGAATATTACAAATGGTGTCACCTGTGAGCCACTCAGTAGGGAACTGTGTGAAGCGCGTGGTCGTCATCGTCTCCTCAGTTATCTTCTTCCAAATTCCTCTCGCCCCGCTCAACATGCTCGGAACTGGTCTTGCACTTGTTGGAGTTTTCTTGTATTCAAGGGCGAAGCAGATAAAGCCAAAGCCACACACTAAAGCTGCATAA 1266 0.4289 MSPSSSSSSCLSHLISATANLRSMHNIPMISHSIAISKFPHPFSSSSSSLPLSLSFTINGGGGGGPFLSYPSQKSPSFLISSPKIQSLRLFAAASVPEAKSDEPIKPAGLIQTLQLGAMFGTWYLLNIYFNIYNKQVLKVYPFPATVTAFQFGFASLMINLIWSLNLHPRPNITRSQLVAILPLVVAHTMGNLLTNISLGKVAVSFTHTIKAMEPFFTVLLSSLFLGEMPTFAVVSSLVPIVGGVALASMTELSFNWIGFATAMASNLTNQSRNVLSKKLMVNEEETLDNINLYSLITIISFILLVPFTIFLEGFKFTPSYLQSAACQGLNVRELCVRSVLAGICFHAYQQVSYGILQMVSPVSHSVGNCVKRVVVIVSSVIFFQIPLAPLNMLGTGLALVGVFLYSRAKQIKPKPHTKAA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272172g00004 421 SUPERFAMILY Multidrug resistance efflux transporter EmrE 157 251 - -
Stsc272172g00004 421 Pfam Triose-phosphate Transporter family 114 407 IPR004853 -
Stsc272172g00004 421 PANTHER SOLUTE CARRIER FAMILY 35 115 411 - -
Stsc272172g00004 421 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 114 416 IPR004696 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272172g00004 Stsc-Chr272172 28014 31005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272172g00004 92 418 Antiporters AT5G33320 64.526 6.30e-144 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272172g00004 K15283 - gmx:100819280 551.592