Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272172g00003 ATGGAGTTTGATCCAAGCTTTCAATCTTCTTTCCTTGCTCCCTCAAATAGGTCACAATTGAGAGATCTCACAAACCCTAATCTTGATGATGATGTCACCATTGCACCATTGTCACAATTGCACCCTAATAATAACAATTCCACTACTCTTCTTACAACTTCTATTTCATCTCCTCCCTTGCCAGCAATAATACCACCTAAAATTTCTGGCAATGGAGATGGGTCAATAATGTTGACTAAGATTGCAAACCATGTCGCTAATGGTGTCATCATCAAAGGGCAGTGGACACCAGAGGAGGACAGTGCTCTGAAGGCATTGGTGAAGGAATATGGACCAAAGAAATGGTCTGAAATTGCTAAACATTTTAAAGGAAGAATTGGAAAACAGTGCCGTGAGAGATGGCTTGGCCATCTTCGTCCAAACATTAGGAAGGGGCCATGGAGTAAAGAGGAAGACATGATGCTTATCAAACTGCACAAAGAAATTGGCAACAAATGGGCAGAAATTGCAAGAAGAATGGAAGGTAGAAGTGATAACTCAGTCAAGAATCATTGGAATGCAATCAAGAGAAGGAGAAGAATGAACACTCAGAATTTTAGGGCAAAGAGGTTCAACACTTATGATTCAAAGAATGTCGTGAAGAAGAATAGTTCCATCAACAATAATAATAACAACAATAAGAAGGGGAAGGCAAAGATGTTATTATGTGCCTCATGCGGCAATAATCTTGGTGATGATCATCATCATCCTCCATTGCTTCATAATTTTGATGAGTTGCCAATCTATGATTTCAGCAATGATTCTTGGGTCACTGAGTTCTATGGCGGTGGCAGTTGCAAAGGTGATGCACCAATTAATGGAGAATGA 867 0.3991 MEFDPSFQSSFLAPSNRSQLRDLTNPNLDDDVTIAPLSQLHPNNNNSTTLLTTSISSPPLPAIIPPKISGNGDGSIMLTKIANHVANGVIIKGQWTPEEDSALKALVKEYGPKKWSEIAKHFKGRIGKQCRERWLGHLRPNIRKGPWSKEEDMMLIKLHKEIGNKWAEIARRMEGRSDNSVKNHWNAIKRRRRMNTQNFRAKRFNTYDSKNVVKKNSSINNNNNNNKKGKAKMLLCASCGNNLGDDHHHPPLLHNFDELPIYDFSNDSWVTEFYGGGSCKGDAPINGE 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272172g00003 288 Gene3D - 91 143 - -
Stsc272172g00003 288 Gene3D - 146 196 - -
Stsc272172g00003 288 MobiDBLite consensus disorder prediction 1 27 - -
Stsc272172g00003 288 MobiDBLite consensus disorder prediction 8 26 - -
Stsc272172g00003 288 CDD SANT 146 189 IPR001005 -
Stsc272172g00003 288 FunFam Transcriptional activator Myb isoform A 91 144 - -
Stsc272172g00003 288 SUPERFAMILY Homeodomain-like 91 185 IPR009057 -
Stsc272172g00003 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 143 193 IPR017930 -
Stsc272172g00003 288 ProSiteProfiles Myb-like domain profile. 92 138 IPR001005 -
Stsc272172g00003 288 SMART sant 91 140 IPR001005 -
Stsc272172g00003 288 SMART sant 143 191 IPR001005 -
Stsc272172g00003 288 CDD SANT 95 138 IPR001005 -
Stsc272172g00003 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 142 IPR017930 -
Stsc272172g00003 288 ProSiteProfiles Myb-like domain profile. 139 189 IPR001005 -
Stsc272172g00003 288 PANTHER MYB PROTEIN-RELATED 80 223 - -
Stsc272172g00003 288 Pfam Myb-like DNA-binding domain 95 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272172g00003 Stsc-Chr272172 21780 24126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272172g00003 82 224 MYB Transcription Factor Family AT5G40360 53.793 9.10e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc272172g00003 Myb_DNA-bind_6 3.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272172g00003 K09422 - ccaj:109801641 167.162