Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272172g00002 ATGAATCCCTCTTCAAAGTCACAGCTTCCATTCACCATGCTCTCATCAGAAACCTTAGCTCCAACTCCTCCACCATCAAAATCAAAAAATCCCTCCCAAAAACCCAATTACAACACCAACATGAATGTGCCTAACTATTTTGCTTCTGCATTTTCTACTCCTGCAACCATGAATAATGCTAACTCCTCTTGGTTACCATCCGGTAACGAGCAGTACGATATTATAGACTTTATCAACCAAAACGGAGATAGAGTTATTGTCACTTCTGCGATTGCGTCAGCCAACAATTCCAATAACCAAGTGCAAATATGGGACTTTGCTAACAAAATTGTGATTACTCCAAAAACTTACTCCTCGGTGGCGGAGGTCGAGGTGGAGGTGGCTACAAAGAATGACACAAAGGCTAATGCTAATGTTCATAGCTTGATCAAAGGGCATCAATGGACACCGGATGAGGACATGACTCTGGAGGCATTAGTGAATGAAAATGAAAATAAGCAGAAAAAATGGTCAGAAATTGCAAAGTCACTTGATGGAAGGAATCCGAAGCAATGTAGAGAGAGATGGCACAATCATCTTCAGCCAAACATCAAGAAGGGAAAATGGACTCCACAAGAAGACATGATTCTGATGAAAGCCCACATGGAGATTGGTGCTAACAAATGGGCTAAGATTTCAAAGAGATTGGCAGGTAGAACTGATAACTCCATCAAGAACCGTTGGAATTGCATCAAGAGGAGAAGAACCACAGTGAACTCAAACTTAAACAAGCCCAATAACAACAACGACTTCGATGGCTCAAAAATGCTCAGAGCCTATATCAATGAAGTGGCTGCAGCCCAAGCAGAAGTAGCATCATCATCCAAGTCAAAGTCAAAGTCAAAGAATGATTCCAACAAGAATAAGGGCAAAGCCAAGATGTTCAATGGGTTTAAAATTGATCTCAATAATCCTCCCTTGGAGTTTCCAAGTGAAGAAGACATCCTCATTCATGGAAGTGGTGCTGGTGGTGAATATGGCAACTAG 1026 0.4152 MNPSSKSQLPFTMLSSETLAPTPPPSKSKNPSQKPNYNTNMNVPNYFASAFSTPATMNNANSSWLPSGNEQYDIIDFINQNGDRVIVTSAIASANNSNNQVQIWDFANKIVITPKTYSSVAEVEVEVATKNDTKANANVHSLIKGHQWTPDEDMTLEALVNENENKQKKWSEIAKSLDGRNPKQCRERWHNHLQPNIKKGKWTPQEDMILMKAHMEIGANKWAKISKRLAGRTDNSIKNRWNCIKRRRTTVNSNLNKPNNNNDFDGSKMLRAYINEVAAAQAEVASSSKSKSKSKNDSNKNKGKAKMFNGFKIDLNNPPLEFPSEEDILIHGSGAGGEYGN 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272172g00002 341 Gene3D - 201 251 - -
Stsc272172g00002 341 MobiDBLite consensus disorder prediction 283 310 - -
Stsc272172g00002 341 Pfam Myb-like DNA-binding domain 148 207 - -
Stsc272172g00002 341 ProSiteProfiles Myb-like domain profile. 148 193 IPR001005 -
Stsc272172g00002 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 249 IPR017930 -
Stsc272172g00002 341 MobiDBLite consensus disorder prediction 1 39 - -
Stsc272172g00002 341 ProSiteProfiles Myb-like domain profile. 194 245 IPR001005 -
Stsc272172g00002 341 SUPERFAMILY Homeodomain-like 142 184 IPR009057 -
Stsc272172g00002 341 CDD SANT 201 245 IPR001005 -
Stsc272172g00002 341 PANTHER MYB PROTEIN-RELATED 144 297 - -
Stsc272172g00002 341 SUPERFAMILY Homeodomain-like 172 250 IPR009057 -
Stsc272172g00002 341 FunFam Transcriptional activator Myb isoform A 143 198 - -
Stsc272172g00002 341 CDD SANT 148 193 IPR001005 -
Stsc272172g00002 341 Gene3D - 146 198 - -
Stsc272172g00002 341 MobiDBLite consensus disorder prediction 1 23 - -
Stsc272172g00002 341 SMART sant 144 195 IPR001005 -
Stsc272172g00002 341 SMART sant 198 247 IPR001005 -
Stsc272172g00002 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 143 193 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272172g00002 Stsc-Chr272172 17225 19019 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272172g00002 141 302 MYB Transcription Factor Family AT4G18770 45.679 1.52e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc272172g00002 Myb_DNA-bind_6 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272172g00002 K09422 - aip:110263065 288.115