Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272172g00001 ATGAATAGAATATGGTTCCGAATTTACGTGATTATTATAAATAAGGATCTCTGTGCCCAGTCGCTGCTCCTTCCCTCTCATTTCCCGTCACCTACTTCAACTTCCCCTTCCCCTTCTCCGGAGCGTCCCGTTGGGCCTCTTCGACCCGCAACCCGGACCCGAAAATCCGATTACATATTCACACATAGAAGTTGCACGCAGAATCCGAGGCAAGTTCTTGTTCACATCTCTACACAGATTTACATTGCCAGTTCACTTGAGATGGCTGCCACAGCAACTGCCTCTTCAGTTGGTCCGCGGTATGCACCACCAGACCCTACGTTACCAAAACCATGGCGGGGTCTTGTCGATGGGAAGACTGGATATCTTTATTTTTGGAATCCTGAAACTAATGTCACCCAATATGAGCGGCCTTCAAGCTCATCTGTCCCACCTGAATATTCTTCTTCGGTGTCAAGTTCCTCTGTCCAGGTTCAACAATCATCTCAAGGGCAGCAGCGTGGTCGCAGTCCCGAGTTGAGTGATAGGTATGATAGAAACAATGGAGGAGTGTCAAACAATGAAGCTGGATCGCGCAACTACCAGGATTCCAAAGGTGGAAATATTAGTTCTCATAATGCTCCAAATGGGATGCATTCTGCTGGAAATGTTAGTTCCTCTGTCAGAGGTCAAGGAGCATCAGATACTGGAGCTGGGTTATCTCCAGAGGCTTATCGGCGTCGGCATGAAATTACTGTTACTGGTGATGATGTTCCTCCTCCACTTACATCATTTAGTTCAAGTGGTCTTCCATCTGAGATTCTTAGAGAGGCTCATGATAATTTTTTGCCATCTTTACTTTGTTGTCGTAGGTGCGATATTTGCTCCTGGGGAGGAGCTAATGTCGTACGCTGTGGTGCCCTATTTTGTGGGCTAGCATTTTATTTGGAGCGCCCTTTACGGTGGACCAAGTTTTTGCAAAGGCTTTCCGAATCATCCAAGTTCGTGGCTGGGACTGCCGTTGGTCATGATTCAGTCTGCCACTTGGCACAGTCGTGGCCTATTGCTCTTCAAAGTAGAGACATAGTTGCCATTGCTAAAACAGGTTCAGGGAAGACTTTGGGGTATTTAATTCCAGCATTTATTCATCTCAAGCGCACTGGTAATGACCCAAGAATGGGCCCCACGGCATTGGTACTATCACCAACAAGGGAGCTAGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGGAAATCGTCGAAAATTACTTGTGCATGTTTGTATGGAGGAGCACCAAAGGGTCCTCAATTGAGAGACATTGATCGTGGAGCAGATATTGTGGTAGCCACACCTGGCCGTTTGAATGATATTCTTGAGATGAGAAGAATTACTCTTAACCAGATTTCTTATCTTGTGCTGGACGAGGCAGACAGGATGCTGGACATGGGTTTTGAACCTCAAATTAGAAAGATTGTAAATGAGGTGCCTGCTCGTAGGCAAACTCTTATGTATACTGCAACATGGCCTAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTGGTCAATCCTGTTCAGGTGAACATTGGGAATGTAGATGAGCTTGTTGCTAACAAGTCTATTACTCAGCATGTCGAAGTATTGTCCTCAATGGAGAAACAGAGAAGACTGGAAAATATTTTGCGGTCACAGGATCAAGGTTCAAAAATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTACACGCCAGTTTGGAGCTGCTGCTATTCATGGGGATAAATCTCAGTCTGAGAGGGACCATGTCTTGAATCAATTTCGAACTGGGAGGTCTCCTGTCCTTGTTGCTACAGATGTTGCAGCTCGAGGACTGGACATCAAAGACATCAGGTAG 1890 0.4545 MNRIWFRIYVIIINKDLCAQSLLLPSHFPSPTSTSPSPSPERPVGPLRPATRTRKSDYIFTHRSCTQNPRQVLVHISTQIYIASSLEMAATATASSVGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSSVPPEYSSSVSSSSVQVQQSSQGQQRGRSPELSDRYDRNNGGVSNNEAGSRNYQDSKGGNISSHNAPNGMHSAGNVSSSVRGQGASDTGAGLSPEAYRRRHEITVTGDDVPPPLTSFSSSGLPSEILREAHDNFLPSLLCCRRCDICSWGGANVVRCGALFCGLAFYLERPLRWTKFLQRLSESSKFVAGTAVGHDSVCHLAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFIHLKRTGNDPRMGPTALVLSPTRELATQIQDEAVKFGKSSKITCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRITLNQISYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHVEVLSSMEKQRRLENILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDHVLNQFRTGRSPVLVATDVAARGLDIKDIR 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272172g00001 629 Gene3D - 319 524 IPR027417 -
Stsc272172g00001 629 MobiDBLite consensus disorder prediction 134 170 - -
Stsc272172g00001 629 Pfam DEAD/DEAH box helicase 343 509 IPR011545 GO:0003676|GO:0005524
Stsc272172g00001 629 Gene3D - 104 157 - -
Stsc272172g00001 629 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 341 628 - -
Stsc272172g00001 629 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 466 474 IPR000629 -
Stsc272172g00001 629 MobiDBLite consensus disorder prediction 29 52 - -
Stsc272172g00001 629 SUPERFAMILY WW domain 100 139 IPR036020 GO:0005515
Stsc272172g00001 629 Pfam Helicase conserved C-terminal domain 546 628 IPR001650 -
Stsc272172g00001 629 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 346 520 IPR014001 -
Stsc272172g00001 629 MobiDBLite consensus disorder prediction 134 237 - -
Stsc272172g00001 629 SMART helicmild6 574 629 IPR001650 -
Stsc272172g00001 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 522 IPR027417 -
Stsc272172g00001 629 CDD WW 109 138 IPR001202 GO:0005515
Stsc272172g00001 629 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 549 629 IPR001650 -
Stsc272172g00001 629 MobiDBLite consensus disorder prediction 31 45 - -
Stsc272172g00001 629 ProSitePatterns WW/rsp5/WWP domain signature. 112 138 IPR001202 GO:0005515
Stsc272172g00001 629 Gene3D - 525 629 IPR027417 -
Stsc272172g00001 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 534 629 IPR027417 -
Stsc272172g00001 629 SMART ww_5 107 140 IPR001202 GO:0005515
Stsc272172g00001 629 SMART ultradead3 334 537 IPR014001 -
Stsc272172g00001 629 MobiDBLite consensus disorder prediction 179 227 - -
Stsc272172g00001 629 CDD SF2_C_DEAD 534 629 - -
Stsc272172g00001 629 ProSiteProfiles WW/rsp5/WWP domain profile. 106 140 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272172g00001 Stsc-Chr272172 10999 14936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272172g00001 350 628 Eukaryotic Initiation Factors Gene Family AT3G19760 32.862 3.60e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272172g00001 K12823 - gmx:100786511 728.398