Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272169g00007 ATGGGAAGGGCTCCCTGTTGTGACAAGGTGGGACTCAACAAAGGCCGCTGGACACAGGAGGAGGATCAAATCTTGACAAACTACATTCGTGCCAATGGAGAAGGTTCTTGGAGGTCTTTGCCAAAGAATGCTGGGTTACTACGATGTGGGAAGAGTTGCAGATTGAGATGGATCAACTATTTGAGAGCTGATCTCAAAAGAGGAAACATCTCCACCGAAGAGGAAGCCATCATCACAAAGTTGCATGCTTCTTTCGGCAACAACATGTTGTAG 273 0.4689 MGRAPCCDKVGLNKGRWTQEEDQILTNYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISTEEEAIITKLHASFGNNML 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272169g00007 90 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc272169g00007 90 SUPERFAMILY Homeodomain-like 15 88 IPR009057 -
Stsc272169g00007 90 FunFam Myb transcription factor 11 67 - -
Stsc272169g00007 90 CDD SANT 16 61 IPR001005 -
Stsc272169g00007 90 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Stsc272169g00007 90 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 87 - -
Stsc272169g00007 90 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc272169g00007 90 Gene3D - 11 67 - -
Stsc272169g00007 90 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272169g00007 Stsc-Chr272169 37399 38817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272169g00007 1 87 MYB Transcription Factor Family AT2G47460 78.161 6.32e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc272169g00007 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272169g00007 K09422 - mnt:21385492 166.777