Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272168g00004 ATGCTCCCAACCCCAAGTTTCAACACAATAAACTACTCTCTTGATCATCACCACCACCACCATCTCTACCCCCAAAATCAAGATCATCATCTCATGAAGTTTCGCCTAGGCGAAGGAGAAACTTCTGGTGAAGGGATAGCCGATTATATCCCTCAGCAACAGCCGCAACCGCCACCACCGTCTTGTTTTTATCAAGCAAACTCTTCCTTTGATAAGCTCAGTTTCGCAGATGTGATGCAGTTTGCAGATTTCGGACCAAAGTTAGCCTTAAACCAAGGCAAGACCTGCGAAGAACCCGGTATCGACCCGGTGTACTTTCTCAAGTTCCCGGTGTTGAATGATAAGATGGAGGAACAAAATATCCTGATGATGAGCCATGAAAGCAGCGATGGCGGCTGCGGTGACGGTGGTGGTCATGAAGAAGCAGAAAACAACGATGACGAGAAAGGTGAAGACATAGGAGGAGCAGATCAAGAAGACGGAAGGATGAAAGGCGAAGAAGAAACCGCTCGAGTTTCCGAAGATAATAACAACAACTCGGTGCAGATTGGGTTTCTTGGCCATGGTGAAGATCTGGTGCTGAACCAGAAGAGGAACAACAACTCTACGACGACGTTGGTGCCGGAGAACAACAAGAACATGAAGAGGAAGAGGCCGAGAACCGTTAAGACAAGTGAAGAAGTTGAGAGCCAGCGGATGACTCACATCGCTGTTGAAAGGAACCGAAGGAAGCAAATGAATGAGCATCTTCGTGTCCTTAGATCCCTCAGGCCTGGTTCTTACGTTCAAAGGGGTGATCAGGCATCGATAATTGGAGGAGCTATAGAGTTTGTGAGGGAATTGGAGCAACTACTTCAGTGCTTAGAATCACAAAAGAGGAGAAGACTACTTGGAGAAGCACAATCAAGACAGGTTGGGGATTCGAACCTTGGAACACAACAACAGCAGCAGCAGCAGCAGGCTCTTCAGCCACCATTCTTTCCGCCATTGCCATCTCCAAGTGAGCAGATGAAGCTGGTGGAGTTGGAGAGCGGACTCCGCGAAGAAACCGCAGAGAGCAAGTCTTGCTTGGCTGATGTTGAAGTGAAGCTTCTCGGATTCGACGCCATGATCAAGATCCTTTCCAGGAGGAGGCCAGGCCAGTTGATCAAGGCTATTGCTGCACTTGAAGATCTTCAACTGATTATTCTTCACACCAACATTACAACCATTGAACAGACCGTGCTTTATTCATTCAATGTCAAGGTGGCTAGTGAGTCAAGGTTCACCGCAGACGATATAGCCAGCTCCGTTCAACAGATATTCAGTTTCATCCATGCAAACACCACCATGTGA 1335 0.4772 MLPTPSFNTINYSLDHHHHHHLYPQNQDHHLMKFRLGEGETSGEGIADYIPQQQPQPPPPSCFYQANSSFDKLSFADVMQFADFGPKLALNQGKTCEEPGIDPVYFLKFPVLNDKMEEQNILMMSHESSDGGCGDGGGHEEAENNDDEKGEDIGGADQEDGRMKGEEETARVSEDNNNNSVQIGFLGHGEDLVLNQKRNNNSTTTLVPENNKNMKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLRPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSRQVGDSNLGTQQQQQQQQALQPPFFPPLPSPSEQMKLVELESGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKAIAALEDLQLIILHTNITTIEQTVLYSFNVKVASESRFTADDIASSVQQIFSFIHANTTM 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272168g00004 444 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 297 IPR036638 GO:0046983
Stsc272168g00004 444 CDD bHLH_AtFAMA_like 233 300 - -
Stsc272168g00004 444 MobiDBLite consensus disorder prediction 126 179 - -
Stsc272168g00004 444 MobiDBLite consensus disorder prediction 133 173 - -
Stsc272168g00004 444 Pfam Helix-loop-helix DNA-binding domain 231 282 IPR011598 GO:0046983
Stsc272168g00004 444 PANTHER TRANSCRIPTION FACTOR FAMA 149 435 IPR044283 GO:0003700|GO:0010052
Stsc272168g00004 444 SMART finulus 236 287 IPR011598 GO:0046983
Stsc272168g00004 444 MobiDBLite consensus disorder prediction 201 232 - -
Stsc272168g00004 444 FunFam Basic helix-loop-helix transcription factor 221 296 - -
Stsc272168g00004 444 Gene3D - 221 296 IPR036638 GO:0046983
Stsc272168g00004 444 MobiDBLite consensus disorder prediction 211 232 - -
Stsc272168g00004 444 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 281 IPR011598 GO:0046983
Stsc272168g00004 444 MobiDBLite consensus disorder prediction 299 328 - -
Stsc272168g00004 444 MobiDBLite consensus disorder prediction 302 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272168g00004 Stsc-Chr272168 38444 41211 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272168g00004 60 444 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 61.990 3.68e-141 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc272168g00004 HLH 3.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272168g00004 K26213 - gmx:100813515 536.569