Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272166g00005 ATGGGTTCCGAGCATAACAACGACAACAGCACAAGCTACCAACCATCGGAGCCAAAACCATGTGCCAACGGCTGCGGCTTCTTCGGCACCGCCGGAAACAGAAACCTCTGCTCCAAGTGCTACAGAGACCTCTGCCTCGAAGAACAGCGTGCTGCTTCAGCCAAAGTCGCCGTTGAGAAAACTCTTCTCCATGGCGGCGCTGCTGCCGTGTCCTCTCCGTATAAGTTCACCACCGACTCATCTGTTGTTCCTGCGGCGGAGCCTTCTTCTTCTTCCGCAGCGCCTTCCAGTCCCGCGAAGCCGTCGAACCGGTGCGGGAGTTGCAAGAAGAAGGTTGGATTGACGGGTTTCGTGTGCAAGTGTGGAGCCACATTCTGCGGGGTTCACCGTTATCCAGAGAAGCATGATTGTTCGTTTGATTTCAAGGGCGTTGGGCGTGACGCGATTTCCAAGGCTAATCCTGTTGTGAAAGCAGATAAGATCGATAAGTTTTAG 495 0.5414 MGSEHNNDNSTSYQPSEPKPCANGCGFFGTAGNRNLCSKCYRDLCLEEQRAASAKVAVEKTLLHGGAAAVSSPYKFTTDSSVVPAAEPSSSSAAPSSPAKPSNRCGSCKKKVGLTGFVCKCGATFCGVHRYPEKHDCSFDFKGVGRDAISKANPVVKADKIDKF 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272166g00005 164 SMART A20_3 18 42 IPR002653 GO:0003677|GO:0008270
Stsc272166g00005 164 MobiDBLite consensus disorder prediction 80 103 - -
Stsc272166g00005 164 ProSiteProfiles Zinc finger AN1-type profile. 99 145 IPR000058 GO:0008270
Stsc272166g00005 164 Gene3D - 4 62 - -
Stsc272166g00005 164 ProSiteProfiles Zinc finger A20-type profile. 15 49 IPR002653 GO:0003677|GO:0008270
Stsc272166g00005 164 FunFam Zinc finger AN1-type containing 6 79 160 - -
Stsc272166g00005 164 PANTHER AN1-TYPE ZINC FINGER PROTEIN 18 163 - -
Stsc272166g00005 164 MobiDBLite consensus disorder prediction 80 104 - -
Stsc272166g00005 164 SUPERFAMILY AN1-like Zinc finger 90 159 IPR035896 -
Stsc272166g00005 164 Pfam AN1-like Zinc finger 105 141 IPR000058 GO:0008270
Stsc272166g00005 164 SMART AN1_Zf_4 105 142 IPR000058 GO:0008270
Stsc272166g00005 164 Gene3D - 78 160 IPR035896 -
Stsc272166g00005 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 60 - -
Stsc272166g00005 164 Pfam A20-like zinc finger 20 42 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272166g00005 Stsc-Chr272166 50303 51266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272166g00005 1 164 C2H2 Transcription Factor Family AT3G52800 41.243 2.31e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272166g00005 - - adu:107472707 270.396