Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272165g00004 ATGGCTTCCGATGGCTTCACCGACAAGAATGCAGTCTTCCGTAAACTCAAGTCCAAGCCCGAAAACAAGATGTGTTTTGATTGCAATGCCAAGAACCCAACTTGGGCCTCCGTTACCTACGGGATCTTCCTCTGCATCGATTGCTCTGCTACTCACCGGAGCCTTGGTGTGCACATCAGCTTCGTCAGATCGACAAATTTAGACTCATGGAGTCCTGAGCAGCTAAAAATGATGAGCTTTGGAGGAAATAATCGTGCACACGTTTTCTTTAAGCAGCATGGATGGACTGATGGTGGTAAAATAGAGGCCAAGTATACGTCAAGAGCTGCAGAGTTATATAAAGATATTCTTTCTAAGGAAGTTGCTAAAAGTATGGCTGAGGAAGCTGTTTCATCATCATCACCTGTTGATTCTCATTCTGCCCAAGCAACTAATGGACTTCCTGATATAAAGACCAATGGATTACCAAAGGAAAATAATGTAGGAAAGCCTGAAATTCTTGAGAAAACCACTTCACTGCCAAGAACTTCACATACAGTGGTTTCCAGCTCTGTCAAGAAGCCTATTGGTACTAAAAAACCTGGCAAGACTAGTGGACTTGGTGCCCGGAAGCTCACGACAAAGCCAAGTGAGTCTCTTTATGAGCAGAAGCCTGAAGAACCCCCTGCTCCAGTACCCACCTCAGCAAAAAGCAATTTTTCTGCTGGGCCTGCAATATCTCGGTTTGAGTATGTAGAACATGTCCAACCATCTGAGATGAATTCTGGCGGTGCGGGTACAAATATGAATGGTCATGTTGCTCCACCAAAGTCATCAAACTTCTTTGCAGACTTTGGAATGGACAGTGGTTTTCCTAGGAAATCTGGGCCAAGTCCAACTAAAGTGCAAATTCAAGAATCTGACGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCCATTTCTTCCTCCCAATTTTTTGGAGATCAGAACAAAGCTGCAGATGTGGCTGCTCAAGCTACTTTGTCTAAGTTTTCAGGTTCATCTGCCATTTCCAGTGCTGATCTCTTTGGTGACTCATCAGACGGCTCTATTGATCTTGCTGCCAGTGACCTCATCAATCGACTATCTTTCCAGGCACAGCAGGATATCTCTTCCCTTAAAAACATTGCTGGAGAGACTGGGAAGAAGCTAAGCTCCTTGGCCAATACCTTGATGGCGGATCTTCAGGACCGGATACTCTAA 1221 0.4447 MASDGFTDKNAVFRKLKSKPENKMCFDCNAKNPTWASVTYGIFLCIDCSATHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAHVFFKQHGWTDGGKIEAKYTSRAAELYKDILSKEVAKSMAEEAVSSSSPVDSHSAQATNGLPDIKTNGLPKENNVGKPEILEKTTSLPRTSHTVVSSSVKKPIGTKKPGKTSGLGARKLTTKPSESLYEQKPEEPPAPVPTSAKSNFSAGPAISRFEYVEHVQPSEMNSGGAGTNMNGHVAPPKSSNFFADFGMDSGFPRKSGPSPTKVQIQESDEARKKFSNAKSISSSQFFGDQNKAADVAAQATLSKFSGSSAISSADLFGDSSDGSIDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLANTLMADLQDRIL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272165g00004 406 CDD ArfGap_ArfGap2_3_like 8 123 - -
Stsc272165g00004 406 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 6 406 - -
Stsc272165g00004 406 MobiDBLite consensus disorder prediction 170 186 - -
Stsc272165g00004 406 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Stsc272165g00004 406 MobiDBLite consensus disorder prediction 128 149 - -
Stsc272165g00004 406 SUPERFAMILY ArfGap/RecO-like zinc finger 11 125 IPR037278 -
Stsc272165g00004 406 MobiDBLite consensus disorder prediction 128 230 - -
Stsc272165g00004 406 Gene3D Arf GTPase activating protein 2 141 IPR038508 -
Stsc272165g00004 406 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Stsc272165g00004 406 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Stsc272165g00004 406 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Stsc272165g00004 406 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Stsc272165g00004 406 Pfam Putative GTPase activating protein for Arf 12 106 IPR001164 GO:0005096
Stsc272165g00004 406 SMART arf_gap_3 10 126 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272165g00004 Stsc-Chr272165 32503 37037 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272165g00004 13 91 C2H2 Transcription Factor Family AT4G05330 45.000 5.20e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272165g00004 K12493 K11855 gmx:100789796 598.971