Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272164g00001 ATGGGTGAGGACCTACCAAGTCCAAACTCTTCTTCTTCTTCGTCTTCGTCTTCGTCTTCTTTGGATCCCCAGACACCAGACCCGGAAAAGCAGAAGAAAAGTGCGAGCAAGAGGGGGAGGGAGAACAATAATAATAATAATAAGCACCCGGTGTACAGAGGAGTGAGAATGAGGACGTGGGGAAAGTGGGTCTCTGAAATAAGAGAGCCTCGTAAGAAGAACCGCATCTGGCTTGGCACCTTCGCCACCCCCGACATGGCCGCCCGCGCCCACGACGTCGCCGCCCTCGCCATCAAAGGCTCCTCCGCCATCCTCAACTTCCCACACCTCGCCCCACAACTCCCTCGCCCCCACTCTAACTGCCCCCGTGATGTTCAGGCAGCCGCCGCCAAAGCCGCCTCCATGGACTTCCTCCCTCCCTCGTCCGAGGAGCCATCGACGCCGGAGGAGCTGGGAGAGATAGTGGAGCTGCCAGCACTTGGAACGAGTTTCGAATCAGTGGAGGCGAGCAAGGAAATGGTGTTCTTGGAGCCCGTTGACGGGTGGCTGTATCCTCACCCATGGTGGTATAACAGCAGCAGCAGCATTTACGAGGAGGAAGTGAGGGAAGATTCCGGCGGGGATCAGATTTCAATGCAGTCTGTGTTTCAATCTAAGTTTCACCATTCCATCTTTGACTTTGACCCTCCTTCCTTGTGGCAACACTAA 708 0.5551 MGEDLPSPNSSSSSSSSSSSLDPQTPDPEKQKKSASKRGRENNNNNNKHPVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATPDMAARAHDVAALAIKGSSAILNFPHLAPQLPRPHSNCPRDVQAAAAKAASMDFLPPSSEEPSTPEELGEIVELPALGTSFESVEASKEMVFLEPVDGWLYPHPWWYNSSSSIYEEEVREDSGGDQISMQSVFQSKFHHSIFDFDPPSLWQH 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272164g00001 235 MobiDBLite consensus disorder prediction 1 53 - -
Stsc272164g00001 235 CDD AP2 52 110 IPR001471 GO:0003700|GO:0006355
Stsc272164g00001 235 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700|GO:0006355
Stsc272164g00001 235 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Stsc272164g00001 235 MobiDBLite consensus disorder prediction 26 44 - -
Stsc272164g00001 235 Pfam AP2 domain 50 100 IPR001471 GO:0003700|GO:0006355
Stsc272164g00001 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 163 - -
Stsc272164g00001 235 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Stsc272164g00001 235 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677
Stsc272164g00001 235 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Stsc272164g00001 235 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Stsc272164g00001 235 FunFam Ethylene-responsive transcription factor 2 50 109 - -
Stsc272164g00001 235 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272164g00001 Stsc-Chr272164 8995 9702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272164g00001 5 188 AP2-EREBP Transcription Factor Family AT5G11590 51.415 2.36e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc272164g00001 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272164g00001 K09286 - gmx:100804801 233.417