Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272161g00001 ATGACGGAAGCTTCTAATTCCTCATTCATCAATGAGGAACAAGAAGCTTTGATCCAAAGTGGTTGGTGGAACAGTGACCTACACATCCCAAACCATTGTAATTGGACAGGCATCATATGCAATGGAGATGGAAGCATTATAGAGATTACAAGAGGGCCTTTGGATATTCCTCAGTCAAAACTGCATCTTCAGAACTTGAATCTCACATCATTTCCCAACTTAGTAACTCTACATCTTAGTGGTTTGGGACTTTTGGGAACTATCCCAAAAGAAATTAAGGCGCTTACTAAGCTTGTTCATCTTGATTTGTCTCTTAACCATCTTCAAGGTATGTTACCTGAAACACTGTCATATCTCACTCAACTTGAGGAGCTTCATGTCGATAACAATTCCCTTAGTGGTGTTGTACCTTCTTCATTGGGTCGATTGAAGAATTTGATCCACCTCTCTCTTGAATTCAACAAATTTGAAGGCACCATACCAATTGAATTAGGGAACTTAACACACTTAGAGAAATTGTATCTTTCAAGCAATTCATTCAATGGTTCAATTCCATCCACTTTAGGTCAACTGAAAAACTTGACTGTTCTCTGTCTTTACTCTAATCAAATCAAGGGCCAAATTCCAATTAAATTAGGAAATTTAAAGAAGTTACAAAGATTACAGCTTGCACATAATTTCCTTGTTGGTAATATCCCTTCTTCTTTCGGCCGGTTGAAGAACTTGAGGCGCCTTAATCTCGGTTTTAACCAACTTGAAGGTCACATACCATGGCAATTAGGAAATTTGAAGAAATTGCAGATACTTTTTCTCTCAAAAAACAGACTCACTGGTTCAATCCCTCTTGAAATAAGAGGTATGATTTCTCTGCAAAAGTTGTCCATAATTCAGAACCAAATAAATGGTTCTATGCCAAAAGAGCTTTTCCAATTGGCCAAGCTGAATTCTCTTCAACTTTCTTCAAATCAATTGTCTGGTTTTATACCACCTGAGGTTGCAAAAGCTCCACGTCTTTGTAAGCTAGAACTCTCCCACAACAACCTTGAAGGGTATATCCCATCCCAAATCCTAAAATGCCCTTTTGCAGGTAATGTTGATCTGAGCTTTAACATGTTGAAAGGAAGCATAGTTCCTTCACAAGTTGGTAATATTACCAAACTTGACCTTAGTCATAATCTTTTGAGTGGTGAAATCCCTCCTCTTTTTGGAGTCAATTCTTCTTTGGTTAATTTGGATCTCAGCTATAACAACCTCAGAGGTAAAATTCCAACAGGGCTTGCAAATTTGAGTCCTATAAACTTGTCTTACAATTTCTTTGACTGTTCAAATTACCATTCTTTCCCAATAGACTCCTTAATTGGAAACACACCAAGCTTTACTTCATGCTTTCCAATTCATCATTCCCTTAAAACAGTGACAATTGTTGTTCCTATTGTTTGTGTTCTTCTCCTCATCATAGTTCTTACCATTCTGTTTTTCATCAAAAGGAAGATGAAAATTAAGAAAAGCATGTTTGAGAAAAACTCACCAGGTGATGGAAACTTATTCTCTGTATGGAACTTTGATGGCAAAATTGCATTCCAAGACATAATAGAAGCAACACAAGACTTTGATATCAGATACTGCATTGGAACCGGTGCATATGGTAGCGTCTACAAAGCCGAATTGCCATGTGGAATAACGGTGGCTTTGAAGAAACTTCATCAAATGGAAACTCAAAACATGTCCTTTGTGAGAAGCTTTCAAAATGAGGTTAAGATGTTAACAGAAATTCGTCACAGGAACATTGTGAAGCTTCATGGATTTTGCCTCCACAAACAATACATGTTCTTGATCTACCAATACATGGAGAGAGGAAGCTTGTTTTCTTTGCTAAACCATGATGATGAAGCTAAGGAATTGTGTTGGAACAAGAGAATGAACATCATCAAAGGAATAGCAAATGCTTTGTGTTACATGCATCATGATTGCACCCCTCCAATTGTTCATAGAGATGTAACAAGCAGCAATGTTTTGTTGAACTCACAACTTGAGGCTTTTGTTTCAGACTTTGGTACGGCAAGACTTATTGATCCTAATTCTTCAAATCAAACACTACCAGTTGGAACATATGGTTATGTTGCCCCAGAGCTTGCTTATACATTGACCGTTACAGAAAAAAGTGATGTTTATAGCTTTGGGGCGGTGGCATTAGAAACATTGATGGGAAAACATCCAAGAGAAATAATTTCAACTTTACAAGACTCATCATCATCATCATCATGGACTCAAAAAATGTTGTTGAAAGATCTGTTGGACCCTCGCCTTCCAATTCCTTCCATTGATGAAAATGGTGGTGATGATGAAGATAGAATAGTTGCTGTGGCAACAGTAGCATTTGCATGTCTGCATTCTGAACCAAAATGTAGACCAACAATGAAGGAAGTGGCTCATAAGTTATCTAATTCCAAACAGATACAGATTGTCTCTTCCACTTTTGATGAAATCTCAATCCTTCAATTGATGTTAGTACCACTTGTCTTTGTTGAAACTCACAAATTGTCAGCCTTAGATCAAGAAGCCAATGCTTTACTTTCAATTAGTCAACAATTATGGAGTAATCAACATCATAATAATGTCTCAAACCGTTGCAACAACTGGCCAGGAATTACATGCAACAAAGCTGGAAGCATAACAAAGCTTTCACCTCCAAAGAATTACACCTCTGAGATCATGATGTCACAACTCTGCATTATCATGGAGTTATGTGAATTACCTAAACTAAGTGGTCTCAAGAAGCTTCAACATCTCAATCTGTCACACAACAATTTTGCAGGTGAGGCTCCTTTTCCATTATTGGCAAACTTAACTCAACTTGTGGTGTTGGACATTTCTAATAACAATTACATTAGTGGCAGAATTTCACATGAACTAAGCAAGCTTGAAAGGCTTGTCATGTTGGACTTGAGTGCCAACTGGTTCAGTGGAAGCATTCCATTGATCTTGGGTCAAATCAAAAGCCTCACACACTTGAACCTTTCCAATAATCTACTAGTAGATAAGGTTCCTTTCACATTGGCAAATCTAACCAATCTCCTTGTGTTGGATCTTTCCCAAAACAAGCTTAGTGGTTTCATTCCTCATGAAATAGGGAAGTTAACAAATTTGTTAACCTTAGACCTCAGTTCAAATTCTCTGTCTGGTCCAATTCCTGAGCAAATAGGGTACCTGAACTGTTTGACAAGTCTCCACCTTGATGCAAATTTGCTTAGTGGCCCTATACCTTCAAATATAGGACTTCTGACCCATTTGGAAGTGTTCACTATAGCTGGGAACCAAATAGAAGGTATTATACCCTTTGGAAGAGTGCATTTGGTTGATCTGAAATACTTAGATCTCTCTAACAATGAAATTTCTGGTGTTATCCCATCTGATATCTTTATTCACTCTAGTTATGTGGATCTCAGCAGAAACAATTTAAGTGGAAGTATTCCTTCTCAAATTGGCCTTAATCTTTCATATCTAGACCTTAGTAACAATAACTTGAGTGGCAAGAAACCAAAGGAGCTTGAGTCTATTACATTCTGCTATCTAAATTGCAATCCCTTTCTTGGTGATGGATATTATGAGTGCCGTGATTCGCAGAAAGAGCAATCACAACACCCTCATAATAAGCATTTTGCTCCATTATTGGTTTTGGTTGTAATCTTGGCCTGCATTACCATTTCATTGGGTTCTATTGGAATTGGAATTTGCATGTTCCATGCAAGGCATTATTATCCTCGAAAGCTCGAAAATAAGGCAACAAAAGATGGAGATTTGTTCTCAATTTGGAACTATGATGCGTCTACAAAGCGCAACTTCCAAGTGGCAAAAACTGTTGCATTGAAGAAGCTTCACAAAACAGAATCAGAAAATCCATCATTTTACAAGAGCTTCTGCAATGAGGTTGAGGTCTTGAAAGAGATTCGTCACCGCAACATCATCAGGCTTTACGGCCATTGTTTGCACAACAGATGCATGTTCTTGGTGTATGAATATCTAGAAAGGGGAAGCTTGTTTTGTAATCTGGCCAATGACGAAGAAGCTCAAGATCTAAGTTGGAGTAAGAGGGTGAATATCATCAAAGGGACAGCTTATGCTCTTGCTCACATGCATCATCACTGTCCTTCTCCTATTGTTCATAGAGATGTCAGCAGCAACAATATTCTGCTGAATTCAGAGTTAGAAGCTTGTGTCTCAGATTTCGGCACAGCAAGACTTCTTGATCCTGATTCATCAAACCAAACTCTTCTAGTTGGTACTTATGGATATGTTGCTCCAGAATTGGCATACACCATGAGTTTGACTACAAAATGTGATGTGTATAGCTTTGGAGTGGTGGCATTAGAAACAATGATGGGGCATCATCCAGGAGAATTTATTTCCTCTTTGTTAAAGCCATCTACACAAAACTTAATGGTGAAAGATGTATTGGATTCAAGAATTCCTCTCCCAACTCTTGAGAATGATATGCAAGATGTTGTGCTTGTTATAACACTAGCATTGGCATGCCTCTCCTCTGATCCTAAATCAAGACCATCAATGCAGGATGTGACTAATGAGTTATTGTCTTCTAAGGGAGCGGCGCCGAGAAGAAGGAAGGAAGAGGAAGAAGAAGAAGAGGAAAAGAGAAGAAAGAAGAAGATAGAAGAAGAAGAAGTTGTCGGCGCGGAAGAGGAAGAGGAAGAACAACAGAGCATCGAAAAATTTTTCAACAAATCTGAAGAGATGCTCCGTCGCTGTTGGGGAAGGAACCATCCGTCGGTAGCCAAGGATCCACCGGAGGAAGGTGATTCGGTGACGGAACAATCACCGGAAAATCGTTCCTTTCGCCCTTTAGAGAAAACCGGTTCGGCAAGTAGGAATTTGGTAGATGAACAGTGA 4905 0.3863 MTEASNSSFINEEQEALIQSGWWNSDLHIPNHCNWTGIICNGDGSIIEITRGPLDIPQSKLHLQNLNLTSFPNLVTLHLSGLGLLGTIPKEIKALTKLVHLDLSLNHLQGMLPETLSYLTQLEELHVDNNSLSGVVPSSLGRLKNLIHLSLEFNKFEGTIPIELGNLTHLEKLYLSSNSFNGSIPSTLGQLKNLTVLCLYSNQIKGQIPIKLGNLKKLQRLQLAHNFLVGNIPSSFGRLKNLRRLNLGFNQLEGHIPWQLGNLKKLQILFLSKNRLTGSIPLEIRGMISLQKLSIIQNQINGSMPKELFQLAKLNSLQLSSNQLSGFIPPEVAKAPRLCKLELSHNNLEGYIPSQILKCPFAGNVDLSFNMLKGSIVPSQVGNITKLDLSHNLLSGEIPPLFGVNSSLVNLDLSYNNLRGKIPTGLANLSPINLSYNFFDCSNYHSFPIDSLIGNTPSFTSCFPIHHSLKTVTIVVPIVCVLLLIIVLTILFFIKRKMKIKKSMFEKNSPGDGNLFSVWNFDGKIAFQDIIEATQDFDIRYCIGTGAYGSVYKAELPCGITVALKKLHQMETQNMSFVRSFQNEVKMLTEIRHRNIVKLHGFCLHKQYMFLIYQYMERGSLFSLLNHDDEAKELCWNKRMNIIKGIANALCYMHHDCTPPIVHRDVTSSNVLLNSQLEAFVSDFGTARLIDPNSSNQTLPVGTYGYVAPELAYTLTVTEKSDVYSFGAVALETLMGKHPREIISTLQDSSSSSSWTQKMLLKDLLDPRLPIPSIDENGGDDEDRIVAVATVAFACLHSEPKCRPTMKEVAHKLSNSKQIQIVSSTFDEISILQLMLVPLVFVETHKLSALDQEANALLSISQQLWSNQHHNNVSNRCNNWPGITCNKAGSITKLSPPKNYTSEIMMSQLCIIMELCELPKLSGLKKLQHLNLSHNNFAGEAPFPLLANLTQLVVLDISNNNYISGRISHELSKLERLVMLDLSANWFSGSIPLILGQIKSLTHLNLSNNLLVDKVPFTLANLTNLLVLDLSQNKLSGFIPHEIGKLTNLLTLDLSSNSLSGPIPEQIGYLNCLTSLHLDANLLSGPIPSNIGLLTHLEVFTIAGNQIEGIIPFGRVHLVDLKYLDLSNNEISGVIPSDIFIHSSYVDLSRNNLSGSIPSQIGLNLSYLDLSNNNLSGKKPKELESITFCYLNCNPFLGDGYYECRDSQKEQSQHPHNKHFAPLLVLVVILACITISLGSIGIGICMFHARHYYPRKLENKATKDGDLFSIWNYDASTKRNFQVAKTVALKKLHKTESENPSFYKSFCNEVEVLKEIRHRNIIRLYGHCLHNRCMFLVYEYLERGSLFCNLANDEEAQDLSWSKRVNIIKGTAYALAHMHHHCPSPIVHRDVSSNNILLNSELEACVSDFGTARLLDPDSSNQTLLVGTYGYVAPELAYTMSLTTKCDVYSFGVVALETMMGHHPGEFISSLLKPSTQNLMVKDVLDSRIPLPTLENDMQDVVLVITLALACLSSDPKSRPSMQDVTNELLSSKGAAPRRRKEEEEEEEEKRRKKKIEEEEVVGAEEEEEEQQSIEKFFNKSEEMLRRCWGRNHPSVAKDPPEEGDSVTEQSPENRSFRPLEKTGSASRNLVDEQ 1634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272161g00001 1634 SMART LRR_typ_2 998 1021 IPR003591 -
Stsc272161g00001 1634 SMART LRR_typ_2 263 286 IPR003591 -
Stsc272161g00001 1634 SMART LRR_typ_2 167 191 IPR003591 -
Stsc272161g00001 1634 SMART LRR_typ_2 215 238 IPR003591 -
Stsc272161g00001 1634 SMART LRR_typ_2 311 335 IPR003591 -
Stsc272161g00001 1634 SMART LRR_typ_2 1022 1045 IPR003591 -
Stsc272161g00001 1634 SMART LRR_typ_2 381 405 IPR003591 -
Stsc272161g00001 1634 SMART LRR_typ_2 239 260 IPR003591 -
Stsc272161g00001 1634 SMART LRR_typ_2 95 118 IPR003591 -
Stsc272161g00001 1634 SMART LRR_typ_2 1118 1142 IPR003591 -
Stsc272161g00001 1634 SMART LRR_typ_2 119 142 IPR003591 -
Stsc272161g00001 1634 SMART LRR_typ_2 1046 1070 IPR003591 -
Stsc272161g00001 1634 FunFam Leucine-rich repeat receptor protein kinase MSP1 500 615 - -
Stsc272161g00001 1634 ProSiteProfiles Protein kinase domain profile. 1229 1530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272161g00001 1634 FunFam Nuclear pore complex protein NUP107 5 162 - -
Stsc272161g00001 1634 FunFam Leucine-rich repeat receptor-like protein kinase TDR 193 447 - -
Stsc272161g00001 1634 CDD STKc_IRAK 543 813 - -
Stsc272161g00001 1634 Gene3D Ribonuclease Inhibitor 161 256 IPR032675 -
Stsc272161g00001 1634 Gene3D Ribonuclease Inhibitor 1016 1116 IPR032675 -
Stsc272161g00001 1634 Gene3D Ribonuclease Inhibitor 6 160 IPR032675 -
Stsc272161g00001 1634 Gene3D Ribonuclease Inhibitor 257 355 IPR032675 -
Stsc272161g00001 1634 Gene3D Ribonuclease Inhibitor 1117 1214 IPR032675 -
Stsc272161g00001 1634 Gene3D Ribonuclease Inhibitor 849 1015 IPR032675 -
Stsc272161g00001 1634 ProSiteProfiles Protein kinase domain profile. 537 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272161g00001 1634 SUPERFAMILY Protein kinase-like (PK-like) 1285 1529 IPR011009 -
Stsc272161g00001 1634 ProSitePatterns Tyrosine protein kinases specific active-site signature. 661 673 IPR008266 GO:0004672|GO:0006468
Stsc272161g00001 1634 Coils Coil 1538 1567 - -
Stsc272161g00001 1634 ProSitePatterns Protein kinases ATP-binding region signature. 543 565 IPR017441 GO:0005524
Stsc272161g00001 1634 Pfam Protein kinase domain 1284 1527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272161g00001 1634 Pfam Protein kinase domain 542 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272161g00001 1634 SUPERFAMILY L domain-like 382 445 - -
Stsc272161g00001 1634 MobiDBLite consensus disorder prediction 1515 1577 - -
Stsc272161g00001 1634 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1386 1398 IPR008266 GO:0004672|GO:0006468
Stsc272161g00001 1634 MobiDBLite consensus disorder prediction 1591 1634 - -
Stsc272161g00001 1634 FunFam MDIS1-interacting receptor like kinase 2 1341 1535 - -
Stsc272161g00001 1634 MobiDBLite consensus disorder prediction 1591 1609 - -
Stsc272161g00001 1634 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 229 815 - -
Stsc272161g00001 1634 Gene3D Transferase(Phosphotransferase) domain 1 1345 1560 - -
Stsc272161g00001 1634 Gene3D Transferase(Phosphotransferase) domain 1 616 830 - -
Stsc272161g00001 1634 MobiDBLite consensus disorder prediction 1534 1560 - -
Stsc272161g00001 1634 SMART LRR_sd22_2 95 127 - -
Stsc272161g00001 1634 SMART LRR_sd22_2 949 973 - -
Stsc272161g00001 1634 SMART LRR_sd22_2 405 431 - -
Stsc272161g00001 1634 SMART LRR_sd22_2 191 217 - -
Stsc272161g00001 1634 SMART LRR_sd22_2 263 284 - -
Stsc272161g00001 1634 SMART LRR_sd22_2 1162 1185 - -
Stsc272161g00001 1634 SMART LRR_sd22_2 1046 1072 - -
Stsc272161g00001 1634 SMART LRR_sd22_2 1022 1037 - -
Stsc272161g00001 1634 SMART LRR_sd22_2 1118 1136 - -
Stsc272161g00001 1634 Pfam Leucine rich repeat 121 179 IPR001611 GO:0005515
Stsc272161g00001 1634 Pfam Leucine rich repeat 1000 1059 IPR001611 GO:0005515
Stsc272161g00001 1634 Pfam Leucine rich repeat 217 276 IPR001611 GO:0005515
Stsc272161g00001 1634 Gene3D Phosphorylase Kinase; domain 1 501 615 - -
Stsc272161g00001 1634 FunFam Receptor-like protein kinase 7 903 1145 - -
Stsc272161g00001 1634 PRINTS Leucine-rich repeat signature 1025 1038 - -
Stsc272161g00001 1634 PRINTS Leucine-rich repeat signature 1046 1059 - -
Stsc272161g00001 1634 Gene3D Phosphorylase Kinase; domain 1 1272 1344 - -
Stsc272161g00001 1634 Gene3D Ribonuclease Inhibitor 356 447 IPR032675 -
Stsc272161g00001 1634 SUPERFAMILY RNI-like 60 374 - -
Stsc272161g00001 1634 FunFam MDIS1-interacting receptor like kinase 2 616 819 - -
Stsc272161g00001 1634 SUPERFAMILY L domain-like 856 1179 - -
Stsc272161g00001 1634 SUPERFAMILY Protein kinase-like (PK-like) 517 813 IPR011009 -
Stsc272161g00001 1634 MobiDBLite consensus disorder prediction 1516 1530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272161g00001 Stsc-Chr272161 11190 20573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272161g00001 84 709 Receptor kinase-like Gene Family AT4G08850 37.333 1.36e-131 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc272161g00001 Pkinase 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272161g00001 - - ahf:112728721 963.755