Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272158g00006 ATGCATTCTCTCTCTATCTTCCCATCGCTTCAAAACCCTAACTTGTACCATGCCCGCCTCTTCAATTCCATCGGAACCCTCAATTTCACTTCAACTTCACCACCACACTCTCACTGCCACTTCTCTCACCACTCCAAACCCCCCCTCTCTCTTCTCTTTAGGCTACACCACCATAGAATCCCGTCCCGGACGATACGCTGCAAAGTTTTGAAGGATCCTGGGGAAGAGGTTAAGGTGGCTTTGGACTCCGACGGTGGACAAGGTGGCGACGGCGGCGACGATGGCGATGGTGGGGATGAGAGAGAGGTGAAGAACAAACAAGGGTCTTCGGGGCCATTGCCTGAATGGTTGAATTTCAACTCCGATGACGCAAAGACTGTGTTTGCGGCTCTTGCTATATCTCTTGCATTTCGTGCGTTCGTGGCTGAGCCGAGGTACATTCCTTCGCTGTCAATGTATCCTACCTTTGATGTTGGAGATCGAATTGTTGCTGAAAAGGTTTCGTTCTACTTTAGAAAGCCTTGTGCAAATGACATAGTGATATTCAAAAGTCCTCCTGTCCTTCAAGAAGTTGGATATACGGATGACGATGTTTTCATAAAACGGATTGTTGCAAAGGAAGGCGATATTGTGGAGGTTCACAAAGGTCGTCTCATAGTTAATGGTGTTGAGAGGAGTGAAAAGTTCATCCTTGAACCACCTTCTTATGAAATGAAACCCATGCGTGTTCCAGAGAACTACGTCTTTGTGATGGGGGACAACCGCAATAACAGCTATGATTCCCATGTGTGGGGTCCGTTGCCAGCCAAGAATATCATCGGTAGATCAGTGTTCCGATACTGGCCTCCAAATAGAATAGCCGGAACTGTCTCAGAGGATACTTGTCCCGTTGACACCAAGCAGGACACAAGTAGTCTTGTTTCTTCTCAATGA 933 0.4748 MHSLSIFPSLQNPNLYHARLFNSIGTLNFTSTSPPHSHCHFSHHSKPPLSLLFRLHHHRIPSRTIRCKVLKDPGEEVKVALDSDGGQGGDGGDDGDGGDEREVKNKQGSSGPLPEWLNFNSDDAKTVFAALAISLAFRAFVAEPRYIPSLSMYPTFDVGDRIVAEKVSFYFRKPCANDIVIFKSPPVLQEVGYTDDDVFIKRIVAKEGDIVEVHKGRLIVNGVERSEKFILEPPSYEMKPMRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIAGTVSEDTCPVDTKQDTSSLVSSQ 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272158g00006 310 Gene3D Umud Fragment, subunit A 137 295 - -
Stsc272158g00006 310 PRINTS Bacterial leader peptidase 1 (S26A) family signature 243 262 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc272158g00006 310 PRINTS Bacterial leader peptidase 1 (S26A) family signature 140 156 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc272158g00006 310 PRINTS Bacterial leader peptidase 1 (S26A) family signature 199 211 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc272158g00006 310 MobiDBLite consensus disorder prediction 79 115 - -
Stsc272158g00006 310 FunFam Peptidase/ serine-type peptidase 149 280 - -
Stsc272158g00006 310 Pfam Signal peptidase, peptidase S26 124 281 IPR019533 GO:0004252|GO:0006465
Stsc272158g00006 310 ProSitePatterns Signal peptidases I signature 3. 248 261 IPR019758 GO:0004252|GO:0016020
Stsc272158g00006 310 SUPERFAMILY LexA/Signal peptidase 138 287 IPR036286 -
Stsc272158g00006 310 NCBIfam signal peptidase I 125 283 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc272158g00006 310 ProSitePatterns Signal peptidases I serine active site. 149 156 IPR019756 GO:0004252|GO:0016020
Stsc272158g00006 310 PANTHER SIGNAL PEPTIDASE I 111 287 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc272158g00006 310 CDD S26_SPase_I 143 275 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272158g00006 Stsc-Chr272158 34156 36409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272158g00006 152 282 MADS-box Gene Family AT1G29960 31.579 8.94e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272158g00006 K03100 - qsa:O6P43_004025 405.986