Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272158g00003 ATGAAGAATAATGTTAAGGCCTGCATGCGTCCTCACATGTTAACTTGGAATAACCTCAAATTAAATGTCTCTTCCACGTCCTTTTCCTCCTCATCCTTGTCCTACACCTTCCCCTTCCACTCCTTCATCATCTTCTCCCTCCCCTCATCAAGCCAAGAGCAGCAGCACTCCCCCAAGTCAGCTACTGTTGCATCTGCCGGAATGGCTGCGCTCGCTGTGGCCAGTATCATTCTTGTGCTGTTTACCATTTTCTGCGTCATTTCTTACTGGAAAAACAGAGGCAAGAAGAAGAAGAAGAACAATAGTAATGATGGAATTGGAAAAATAATAATATCAAAGAGGAGAATATTCAGGTATGAGGGGCTGGAACGTGCAACGAATGGGTTCTGTGATGCCAACAAGGTTGGAGAAGGTGGATTTGGTTACGTCTACAGAGACAGAGACAGAGGGGTCCTTGTTTATGAGTTTGTTCCTAACAATACATTGCACTTCCATTTACATGGGGAAGGACCTACTATAGATTGGCCTACAAGGATGAAGATTGCTTTGGGAGCAGCAAAAGGACTAGCATATCTTCATGACGATTGTCATCCCAATATCATCCATCCAGATATCAAACCTGCCAACATCCTCCTTGATTTTAACTTTCAAGTAAAGGCAATGCCTATGCTGAGACGTGCTTTACAAGGTAATGATTTTGATGCTGTGGTTGATCCAAGACTCCAGAATCAGTATGAACCCTCTGAGATGGCTCGCATGGTGGCATGTGCAGCCGCTGATCATACACCATCCATGACACAGATAGTTTGTGCACTGAAAGGAGACGCATCTCAAGTTTCTGAGTACACTTCTAATGAAAGCTCAGATTCTGAGGCTGCACAGTACAAGCAAGACATGATCACAATGTTCACAAGAAATATCAAGAATGACTAG 933 0.4373 MKNNVKACMRPHMLTWNNLKLNVSSTSFSSSSLSYTFPFHSFIIFSLPSSSQEQQHSPKSATVASAGMAALAVASIILVLFTIFCVISYWKNRGKKKKKNNSNDGIGKIIISKRRIFRYEGLERATNGFCDANKVGEGGFGYVYRDRDRGVLVYEFVPNNTLHFHLHGEGPTIDWPTRMKIALGAAKGLAYLHDDCHPNIIHPDIKPANILLDFNFQVKAMPMLRRALQGNDFDAVVDPRLQNQYEPSEMARMVACAAADHTPSMTQIVCALKGDASQVSEYTSNESSDSEAAQYKQDMITMFTRNIKND 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272158g00003 310 SUPERFAMILY Protein kinase-like (PK-like) 105 219 IPR011009 -
Stsc272158g00003 310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Stsc272158g00003 310 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 220 300 IPR047117 -
Stsc272158g00003 310 Gene3D Transferase(Phosphotransferase) domain 1 157 221 - -
Stsc272158g00003 310 Gene3D Phosphorylase Kinase; domain 1 98 156 - -
Stsc272158g00003 310 ProSiteProfiles Protein kinase domain profile. 17 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272158g00003 310 Pfam Protein kinase domain 142 219 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272158g00003 Stsc-Chr272158 19961 21440 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272158g00003 49 219 Trihelix Transcription Factor Family AT4G32710 36.364 3.91e-33 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc272158g00003 Pkinase 7.8e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272158g00003 - - ahf:112743291 154.066