Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272158g00002 ATGTCATCTGCCGCCCCCTCCCCCGCCGTCACGCCGCCCCCAAACACCACCTCCCCACCTCCACCACCTTCTAATCCTTCTCCTCCTCCATCCACCTCGGCCTCCCCTTCCATTCCACCTGCACGTCATTCCTCGTGGAAGATATCCACCGTGGTTTATGTCGGACTCGGAGCGGGGGCTCTGCTGGCCATTCTGGTGCTATGCATTCTCTGCATTTGTTGTAGGAAGAAGAAAAGGCCACCTCACCCATCTAAAGATGCTTCTTCATATTGGCCAAACAATGATGCCCCACCTCCACATCGTGTCATCCACATCAACCCAAACCCATCACCTTCTCCTCATCATCCTCTCACCACCACTGCTGCTTCCGCTTCCGCTTCAGCTTCATACAATGCACCCCATGAAAATAATCCTCTTCAACTAGCTTCTTCTGCATTGGGCTTCTCCCGGAGCAAATTTACGTATGAGGAGCTGGCACGCGCAACTGATGCCTTCTCTGATTCCAACCTCCTTGGACAAGGCGGATTTGGTTATGTCCATAAAGGGTTTCTTCCGAACGGCAAGGAGGTAGCCATCAAACAGCTCAAGGCCGGCAGTGGTCAGGGGGAGCGTGAATTCCAAGCTGAAGTTGAGATCATTAGCAGGGTCCATCACAGGCATCTTGTTACTTTGGTGGGCTATTGCATCACCGGTACCAAGAGGCTTCTTGTTTATGAGTTCGTTCCAAACAATACTTTGGAGTTCCATTTACATGGAAAAGAGCTACCTACGATGGATTGGTCCACAAGATTGAAAATTGCTTTAGGAGCTGCAAAAGGACTTGCATACCTTCACGAAGACTGTCATCCCAAGATCATCCATCGTGATATCAAAGCTGCTAACATCCTTCTCGACTCTAACTTTGAACCAAAGGTTGCAGATTTTGGGCTAGCAAAGTTTTCTTCTGATCTGAATACACATGTTTCCACTCGAGTAATGGGAACTTTTGGTTATTTGGCTCCAGAATATGCTGCAAGTGGAAAACTAACTGAAAAATCAGATGTTTTCTCGTATGGAGTTATGCTTTTGGAGTTGATTACCGGTCGTCGTCCAGTTGATTCAAGTCCTACTTTTGTTGAGGATAGTTTGGTAGATTGGGCAAGACCTTTGCTGACAAGAGCTTTGGAAGATCAAAATTTTGATCCTCTGATTGATCCAAGGCTGAAGGATGATTATGAACCCAATGAGATGACTCGCATGGTGGCCTGTGCTGCGGCTTCTATTAGACATTCAGCAAAGCATCGCCCAAGGATGAGCCAGATTGCTCGTGCTCTGGAAGGAGATGCGTCTCTTGAAGATCTCAATGATGGAGTTAAAGCAGGACACAGCAGAAGCTATAGTTCTCGTGAAAGGACAGATTATGAGACAGCACAATACTAG 1419 0.4771 MSSAAPSPAVTPPPNTTSPPPPPSNPSPPPSTSASPSIPPARHSSWKISTVVYVGLGAGALLAILVLCILCICCRKKKRPPHPSKDASSYWPNNDAPPPHRVIHINPNPSPSPHHPLTTTAASASASASYNAPHENNPLQLASSALGFSRSKFTYEELARATDAFSDSNLLGQGGFGYVHKGFLPNGKEVAIKQLKAGSGQGEREFQAEVEIISRVHHRHLVTLVGYCITGTKRLLVYEFVPNNTLEFHLHGKELPTMDWSTRLKIALGAAKGLAYLHEDCHPKIIHRDIKAANILLDSNFEPKVADFGLAKFSSDLNTHVSTRVMGTFGYLAPEYAASGKLTEKSDVFSYGVMLLELITGRRPVDSSPTFVEDSLVDWARPLLTRALEDQNFDPLIDPRLKDDYEPNEMTRMVACAAASIRHSAKHRPRMSQIARALEGDASLEDLNDGVKAGHSRSYSSRERTDYETAQY 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272158g00002 472 MobiDBLite consensus disorder prediction 115 133 - -
Stsc272158g00002 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Stsc272158g00002 472 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 60 459 IPR047117 -
Stsc272158g00002 472 MobiDBLite consensus disorder prediction 448 464 - -
Stsc272158g00002 472 MobiDBLite consensus disorder prediction 1 41 - -
Stsc272158g00002 472 MobiDBLite consensus disorder prediction 79 133 - -
Stsc272158g00002 472 ProSitePatterns Protein kinases ATP-binding region signature. 171 193 IPR017441 GO:0005524
Stsc272158g00002 472 SMART serkin_6 165 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272158g00002 472 SUPERFAMILY Protein kinase-like (PK-like) 147 438 IPR011009 -
Stsc272158g00002 472 MobiDBLite consensus disorder prediction 448 472 - -
Stsc272158g00002 472 Gene3D Phosphorylase Kinase; domain 1 124 240 - -
Stsc272158g00002 472 ProSiteProfiles Protein kinase domain profile. 165 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272158g00002 472 FunFam proline-rich receptor-like protein kinase PERK1 143 240 - -
Stsc272158g00002 472 Pfam Protein tyrosine and serine/threonine kinase 169 436 IPR001245 GO:0004672|GO:0006468
Stsc272158g00002 472 Gene3D Transferase(Phosphotransferase) domain 1 241 455 - -
Stsc272158g00002 472 MobiDBLite consensus disorder prediction 7 36 - -
Stsc272158g00002 472 FunFam Proline-rich receptor-like protein kinase PERK1 241 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272158g00002 Stsc-Chr272158 17231 19509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272158g00002 13 463 Trihelix Transcription Factor Family AT1G70460 50.547 1.24e-155 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc272158g00002 PK_Tyr_Ser-Thr 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272158g00002 - - qsa:O6P43_004029 568.54