Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272157g00009 AAAATTGTGACCTGCAAATTTCTCAAACCTGGTGTTGATGTTGGTGATACTCTTAATGCAGCAACAATAGCCAAGGTTGTTCGAGTTTCTGTGATGGATCCATACATCACTGATTCTTCCAGTGACGAGGAGGAATATCAACAACATCAAAGGCAAACCAAAGTGAAGCAGATTGTAAATGAGATAAGAATTTTGTATCCACCATTTCACAACACCACCAAGATGCAAAGGTCTAAACAACAGCAACAACAGAACAAGGGGAAAAAGGTGGTTGTGGCTGCCCCGAAAGCTTCTTCTTCTTGTTCTCACCAGGGTAGAAAGCTACGAGGGGTTAGGCAAAGACCATGGGGAAGATGGGCTGCAGAGATTAGAGACCCTGTGAAGCGTAGTAGATTGTGGTTAGGAACCTATGACACTGCTGAAGAAGCCGCCATGGTTTATGATAGAGAAGCTATTCGCCTTAGAGGCCCTCATGCTCAAACTAATTTCCTCAAGCCTCCAAAGATAGAAGACCATGTAGAAGGTTTTGATTGCAACTTTTTCGAGGGGATGGAGGATAATTCAGTTAGAGGATGTGGTCATGATCTGCCTTCTCCTACTTCTCCGACTTCTGTTCTTGTATTTCAGTCTCATGGATCTCGAAATAAGGTTTTAGAAGAGGAAAGAAAGCCTAAAGATGAATCTTCTTCCAAATTTCAGGATGCATCTTTTTTAGATTCGCCATCTATGGAGGATTTTTGTTTACCGGACTTTGAGATTCCTCCCCCAATATTTCTTGATGAAATTTGCCTACCCCATTTTGTTTTTAGTGACAACAATTTTGATGATGTAACAATTGACCAGGCTATTGAATTATGTAACTTGGATTTAGATGATTACTTTTGTAATCACACACCAAATTGA 903 0.4064 KIVTCKFLKPGVDVGDTLNAATIAKVVRVSVMDPYITDSSSDEEEYQQHQRQTKVKQIVNEIRILYPPFHNTTKMQRSKQQQQQNKGKKVVVAAPKASSSCSHQGRKLRGVRQRPWGRWAAEIRDPVKRSRLWLGTYDTAEEAAMVYDREAIRLRGPHAQTNFLKPPKIEDHVEGFDCNFFEGMEDNSVRGCGHDLPSPTSPTSVLVFQSHGSRNKVLEEERKPKDESSSKFQDASFLDSPSMEDFCLPDFEIPPPIFLDEICLPHFVFSDNNFDDVTIDQAIELCNLDLDDYFCNHTPN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272157g00009 300 CDD AP2 107 163 IPR001471 GO:0003700|GO:0006355
Stsc272157g00009 300 FunFam Ethylene-responsive transcription factor 2 107 165 - -
Stsc272157g00009 300 MobiDBLite consensus disorder prediction 215 237 - -
Stsc272157g00009 300 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 25 225 - -
Stsc272157g00009 300 MobiDBLite consensus disorder prediction 215 232 - -
Stsc272157g00009 300 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Stsc272157g00009 300 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
Stsc272157g00009 300 MobiDBLite consensus disorder prediction 71 88 - -
Stsc272157g00009 300 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
Stsc272157g00009 300 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Stsc272157g00009 300 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Stsc272157g00009 300 SUPERFAMILY DNA-binding domain 107 163 IPR016177 GO:0003677
Stsc272157g00009 300 MobiDBLite consensus disorder prediction 70 107 - -
Stsc272157g00009 300 Gene3D AP2/ERF domain 107 165 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272157g00009 Stsc-Chr272157 47602 48505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272157g00009 24 253 AP2-EREBP Transcription Factor Family AT4G27950 38.492 3.09e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc272157g00009 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272157g00009 - - adu:107491972 391.349