Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272157g00004 ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGGGGGAAGAACGAAGCGGACGACGAGAAGAGGGAGCTTGTTTTCAAGGAGGACGGACAGGAATACGCGCAGGTCTGGATCGCCGCCGGTGACATCATCCTCGTCGGACTCCGCGACTACCAGGACGACAAGGCTGACGTCATCCTCAAGTACATGGCCGACGAGGCCAGACTCCTCAAGGCCTACGGCGAGCTTCCTGACACCACCCGCATCAACGAGACCATCGGCGGCGGCCTCGACGACGATGACGATCAGCATGGCGACGACTACATCGAGTTCGAAGACGAGGATATCGATAAAATCTAA 345 0.571 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVWIAAGDIILVGLRDYQDDKADVILKYMADEARLLKAYGELPDTTRINETIGGGLDDDDDQHGDDYIEFEDEDIDKI 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272157g00004 114 ProSiteProfiles S1 domain IF1 type profile. 32 65 IPR006196 GO:0003723|GO:0003743|GO:0006413
Stsc272157g00004 114 SUPERFAMILY Nucleic acid-binding proteins 2 113 IPR012340 -
Stsc272157g00004 114 MobiDBLite consensus disorder prediction 86 114 - -
Stsc272157g00004 114 Gene3D - 38 114 IPR012340 -
Stsc272157g00004 114 Gene3D - 2 37 IPR012340 -
Stsc272157g00004 114 SMART eIF1neu4 28 79 IPR001253 GO:0003743|GO:0006413
Stsc272157g00004 114 PANTHER EIF-1A 1 38 IPR001253 GO:0003743|GO:0006413
Stsc272157g00004 114 MobiDBLite consensus disorder prediction 95 114 - -
Stsc272157g00004 114 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272157g00004 Stsc-Chr272157 30112 30555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272157g00004 1 114 Eukaryotic Initiation Factors Gene Family AT2G04520 68.276 1.12e-56 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272157g00004 K03236 - gmx:100780794 149.058