Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272155g00004 ATGGAAGTGAAACCCATAGCTCTGCAATTACTAGTCATTACTTCAGTTCTTCTTCTTCTTCTTCTTCTTTTTGGACTGCCTTCCTGTACAGCACTTAATGATACTTGCGGTTCGCTCAATCGAGACACTCAAGCACCGTGCCCAATTGATTGGGTTATAGATCGTAATAAGACCAAGTGTTTTCTCCATGTTGGGAGGCCTCAATCTTGGAATGAGTCAGAGACTTGTTGCAATAAATATGGTGGGCATTTAGCGTCACTGGCATCGGTTCAGGAGCTACAATTTGCTCAGAATCTATGCGGCGAATCTATCACCAGTTGCTGGATTGGTGGAAGAAGTATCAATTCTACAACTGGTTACCAATGGATGTGGTCTGACAATTCTCAATGGAATCAGTCCATTTTTCCCCTGACTGATGTTCCGAGCAACTGTATTCGACCATCTTGTAGTGCTAATCGAACCAACGGTTTATGTGCAGTAGTGACTAACAACTCAAAATCTCTCTTGAGTGAGAGATGTGATAATCCTCATTCTTCTGTATGTGTACTTGAAATAGTCGCAGATAGGAAATGTAATCATATGCACTGCCACAGGGAATACCTTATCATCCTTTTAGTTGTGAGTGCATTGATACTCTCGACAACATTAGCGGTGGTGGTTTGGCTCCTTGTATATAAACAGGGCAAGAAAAGAAGGCGGTCTAGAAAACTATCTGACCCAGCAACTTCTGTTCCATCATGGAAAGTTTTTACCAAAGATGAATTAAGGTCTATTACAAAGAATTTCAGTGAAGGTAACCGTCTTGTTGGGGATGCCAAGGCGGGTGGTACATACAGCGGAGTCCTTCCAGATGGCTCAAAGGTTGCAGTTAAGAGATTAAAGAGGTCAAGCTTCCAACGTAAAAAGGAGTTCTATTCAGAGATTGGCAGGGTTGCAAGGCTCCACGATCCAAATCTAGTAGCTGTAATGGGGTGCTGCTATGATCACGGTGACCGATATATTGTTTATGAGTTTGTAGCTAATGGACCCTTAGATAAATGGCTACATCACATACCAAGAGGAGGGCGGAGCTTAGACTGGGCTATGAGGATGAAAATTGCCACCACACTTGCTCAAGGGATCGCGTTTTTGCATGACAAGGTTAAGCCACAAGTTGTGCATCGAGATATACGAGCTAGTAATGTATTGTTAGACGAGGAGTTCGGAGCACACCTGATGGGTGTTGGTCTATCAAAGTTTGTACCATATGAAGCAATGCACGATCGGACCGTCATGGCAGGTGGAACATACGGATATCTTGCTCCAGAATTTGTGTATAAAAACGAGCTAACAACAAAAAGTGATGTGTATAGTTTCGGAGTCCTCCTACTCGAAATAGTCACTGGGCGCCGACCTGCACAAGCAGTTGATTCTATGGGCTGGCAGAGTATATTTGAATGGGCAACACCCCTTGTGCAAGCGAATCGCTACCCTGAACTCTTGGATCCTCATATTTCATCGTCGTCTTCAAGTATCATCCCAGAGACAAGTACCATTCAGAAGGTGATCGACCTTGTCTATTCTTGCACACAGCATGTTCCGTCTATGCGCCCTAGAATGTCTCATGTTGTTCTTCAGTTACAACAGTTCTCCCAACCACCTGCAAAGTAA 1650 0.4376 MEVKPIALQLLVITSVLLLLLLLFGLPSCTALNDTCGSLNRDTQAPCPIDWVIDRNKTKCFLHVGRPQSWNESETCCNKYGGHLASLASVQELQFAQNLCGESITSCWIGGRSINSTTGYQWMWSDNSQWNQSIFPLTDVPSNCIRPSCSANRTNGLCAVVTNNSKSLLSERCDNPHSSVCVLEIVADRKCNHMHCHREYLIILLVVSALILSTTLAVVVWLLVYKQGKKRRRSRKLSDPATSVPSWKVFTKDELRSITKNFSEGNRLVGDAKAGGTYSGVLPDGSKVAVKRLKRSSFQRKKEFYSEIGRVARLHDPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGAHLMGVGLSKFVPYEAMHDRTVMAGGTYGYLAPEFVYKNELTTKSDVYSFGVLLLEIVTGRRPAQAVDSMGWQSIFEWATPLVQANRYPELLDPHISSSSSSIIPETSTIQKVIDLVYSCTQHVPSMRPRMSHVVLQLQQFSQPPAK 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272155g00004 549 ProSiteProfiles C-type lectin domain profile. 56 182 IPR001304 -
Stsc272155g00004 549 FunFam C-type lectin receptor-like tyrosine-protein kinase 240 338 - -
Stsc272155g00004 549 Gene3D Phosphorylase Kinase; domain 1 238 338 - -
Stsc272155g00004 549 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 339 549 - -
Stsc272155g00004 549 SMART CLECT_2 47 182 IPR001304 -
Stsc272155g00004 549 CDD CLECT 59 181 - -
Stsc272155g00004 549 ProSiteProfiles Protein kinase domain profile. 263 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272155g00004 549 SUPERFAMILY C-type lectin-like 8 183 IPR016187 -
Stsc272155g00004 549 Gene3D Transferase(Phosphotransferase) domain 1 339 545 - -
Stsc272155g00004 549 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 84 542 - -
Stsc272155g00004 549 Pfam Lectin C-type domain 67 182 IPR001304 -
Stsc272155g00004 549 Gene3D - 28 185 IPR016186 -
Stsc272155g00004 549 Pfam Protein tyrosine and serine/threonine kinase 283 540 IPR001245 GO:0004672|GO:0006468
Stsc272155g00004 549 ProSitePatterns Tyrosine protein kinases specific active-site signature. 385 397 IPR008266 GO:0004672|GO:0006468
Stsc272155g00004 549 SUPERFAMILY Protein kinase-like (PK-like) 235 540 IPR011009 -
Stsc272155g00004 549 SMART tyrkin_6 268 540 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272155g00004 Stsc-Chr272155 22323 25945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272155g00004 77 546 Receptor kinase-like Gene Family AT1G52310 69.247 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Stsc272155g00004 PK_Tyr_Ser-Thr 2.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272155g00004 - - gmx:100779497 886.33