Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272155g00001 ATGGGGATGAAGAAGAGCGAAAAAGGCAGCAAGCAAGTGATGGAAAATAAGAGGAATGAAAACAAAGTTGTTGGCAATGCTGCCAGCAATGCAACCATAGGAAATGACGGCGTTTTTGCTTCTTGCTCCTTCTCCAGCCTTGGCCTCCACCCCTCCTTATGTGATGAACTACGTGAAAAATTGGGATTTGAAGTTCCAACTTTGGTGCAAGCTCAAGCCATTCCTGTTATTCTCGCTGGTCGTCATGCACTTATTAATGCTGCCACGGGCACAGGGAAGACAGTTGTGTACTTAGCTCCACTTATTCATCACTTGCAGAATTATGATACTCGCATACAACGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGTGAGCTATGTTTGCAGGTTTATGAAATTCTTCAAAAGCTATTGCATCGATTCCATTGGATTGTTCCAGGGTATGTTATGGGTGGGGAAAATAGATCAAAGGAAAAAGCCAGGCTACGCAAAGGCATATCAATTCTTATAGCAACACCTGGGCGCCTTTTAGATCATTTGAAGAATACATCATCATTCTTATACACAAAATTGCGCTGGATAATATTTGATGAAGCTGATAGGATTTTGGAATTAGGATTTGGAAAAGATATACAGGAAATACTAGATCTTTTAGGTTCAACAAAAGCAGCAAATGATAACGTAGAGAACAAAGTTCCAAGAAACTCTAAATTTCAAAGACAGAATTTGCTTTTGTCTGCCACCTTAAATGACAAAGTGAACCACCTTGCTAAAATAAGTCTACACAATCCCGTAATGATTGGTCTTGAGGGTAAAACAAGAGAACCAGTATCAACAATTGAAAGCATTGATCCTTCAGAATCTGATGAAGATGATGAAGTCAAGTATTCCAGTAAAATACCAACAGTTGTAGATTATAAAATCCCCACACAGTTAATTCAGAGATACGTGAAAGTGCCTTGTGGTTCTCGGCTTGCGGCTCTTCTTTCAATTTTAAAGCATCTTTTTGAAAGAGATGCTTCGCAAAAGGTTGTGGTATTCTTTTCAACATGTGATGCGGTAGACTTTCACTATTCACTGCTAAGTGAGTTCCACTTCTCAACCGATCCTCAAACAAAAGAAGGGGACCGGCAGATGTTTCTTGGATGCAGAACTTTTCGGTTGCATGGTAATATGGAACATGAAGACCGGAGATCCACTTTTCAGGCTTTTAAAACTGAGAAATCTGCTTTGCTTTTTTCCACTGATGTTTCTGCTAGAGGTCTGGATTTTCCAAAGGTTCGATGCATCATACAGTATGATTCTCCTGGGGAAGCTACTGAATATGTGCACAGAGTTGGTAGAACTGCTCGTCTGGGTGAAAGGGGAGAGTCCTTGTTATTTCTGCAACCAGCTGAAATAGATTATTTACAGGACTTGGAGAAACATGGTGTTTCACTAACAGAGTATCCTCTTCTCAAAGTGTTGGATAATTTTCCACTCTATGGACAAAATAAACTCGCAAAGAAGTCTGTTTTCATCGACTTGCATCCTTGGGTCCTTTGTCTCCAGAAAGCACTTGAATCCTTCATCGTTTCCAAGCCGAAGATGGATGAACTTGCGAGGAAGGGATTTTGCTCTTGGGTCCGTGCTTACACTGCACATCGTGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCATGTAGCCAAAAGTTTTGCATTGAAACAACAGCCCTCCTTAGTAGGACAATCCTTCCAAAAGCAAAATAAGAAGAGGAAGAGATTTGAGAAGAAAAGTGGTCTATCCAAAAGGAGAAAAGTTCCTAGAGTGACGTAG 1839 0.4073 MGMKKSEKGSKQVMENKRNENKVVGNAASNATIGNDGVFASCSFSSLGLHPSLCDELREKLGFEVPTLVQAQAIPVILAGRHALINAATGTGKTVVYLAPLIHHLQNYDTRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILIATPGRLLDHLKNTSSFLYTKLRWIIFDEADRILELGFGKDIQEILDLLGSTKAANDNVENKVPRNSKFQRQNLLLSATLNDKVNHLAKISLHNPVMIGLEGKTREPVSTIESIDPSESDEDDEVKYSSKIPTVVDYKIPTQLIQRYVKVPCGSRLAALLSILKHLFERDASQKVVVFFSTCDAVDFHYSLLSEFHFSTDPQTKEGDRQMFLGCRTFRLHGNMEHEDRRSTFQAFKTEKSALLFSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPAEIDYLQDLEKHGVSLTEYPLLKVLDNFPLYGQNKLAKKSVFIDLHPWVLCLQKALESFIVSKPKMDELARKGFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQNKKRKRFEKKSGLSKRRKVPRVT 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272155g00001 612 CDD DEADc_DDX31 53 271 - -
Stsc272155g00001 612 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 42 71 IPR014014 GO:0003724
Stsc272155g00001 612 SMART DUF4217_3 518 583 IPR025313 -
Stsc272155g00001 612 SMART ultradead3 62 286 IPR014001 -
Stsc272155g00001 612 CDD SF2_C_DEAD 315 465 - -
Stsc272155g00001 612 SMART helicmild6 358 456 IPR001650 -
Stsc272155g00001 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 477 IPR027417 -
Stsc272155g00001 612 Gene3D - 3 273 IPR027417 -
Stsc272155g00001 612 Pfam DEAD/DEAH box helicase 68 258 IPR011545 GO:0003676|GO:0005524
Stsc272155g00001 612 Pfam Domain of unknown function (DUF4217) 520 580 IPR025313 -
Stsc272155g00001 612 PANTHER RNA HELICASE 23 584 - -
Stsc272155g00001 612 Gene3D - 325 607 IPR027417 -
Stsc272155g00001 612 Pfam Helicase conserved C-terminal domain 333 456 IPR001650 -
Stsc272155g00001 612 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 198 206 IPR000629 -
Stsc272155g00001 612 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 503 IPR001650 -
Stsc272155g00001 612 FunFam RNA helicase 3 272 - -
Stsc272155g00001 612 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 74 270 IPR014001 -
Stsc272155g00001 612 MobiDBLite consensus disorder prediction 593 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272155g00001 Stsc-Chr272155 5664 12430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272155g00001 35 488 Eukaryotic Initiation Factors Gene Family AT3G19760 25.383 1.13e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272155g00001 K14806 - gmx:100805157 954.125